View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21306_high_3 (Length: 497)
Name: NF21306_high_3
Description: NF21306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21306_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Complemental strand, 20429225 - 20428744
Alignment:
| Q |
10 |
aaatgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacataagtgttatgatatatgaggtttgaaatccaaaactattataaacttataa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20429225 |
aaatgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacatatgtgttatgatatatgaggtttgaaagccaaaactattataaacttataa |
20429126 |
T |
|
| Q |
110 |
tgtttggtcacttgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtag |
209 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20429125 |
tgtttgctcacatgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtag |
20429026 |
T |
|
| Q |
210 |
cattaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaaggcgaggcactccccactagccttctcaattctagctatgttcg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20429025 |
cattaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaagacgaggcactccccactagccttctcaattctagctatgttcg |
20428926 |
T |
|
| Q |
310 |
tttcggtgaaccttggagcaattaccttaattgcaagtacttcaaaatccctaatgtaatttgagacacaagtcacatggtgctgggtttgtaaattgca |
409 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20428925 |
tttctgtgaaccttggagcaattaccataattgcaggtacttcaaaatccctaatgtaatctgagacacaagtcacatggtgctgggtttgtaaattgca |
20428826 |
T |
|
| Q |
410 |
attacaaactataatgaagaattgcaaattgcaatatcaaatagacatgtttaagatcaaatcttactccaagggtaagttg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
20428825 |
attacaaactataatgaagaattgcaaattgcaatatcaaatagacatgtttaagctcaaaccttactacaagggcaagttg |
20428744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 148 - 364
Target Start/End: Complemental strand, 44439422 - 44439205
Alignment:
| Q |
148 |
aaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaaatacataccatgttctggcataaaggagctc |
247 |
Q |
| |
|
||||||||||||| ||| | ||||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
44439422 |
aaaattactgcaatttttataaaattataacacttagaataacaataagcaaacaagagtagtattaaaatacataccgtgttctggcctaaaggagctc |
44439323 |
T |
|
| Q |
248 |
taggagccagcggatc-aaggcgaggcactccccactagccttctcaattctagctatgttcgtttcggtgaaccttggagcaattaccttaattgcaag |
346 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||||||| |||||||||||||||||| || | |||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
44439322 |
taagagccagctgatcaaaggtgaggcactccccaccagccttctcaattctagccctggccttttcggtgaaccttagagcagttaccttaattgcagg |
44439223 |
T |
|
| Q |
347 |
tacttcaaaatccctaat |
364 |
Q |
| |
|
||||||| || ||||||| |
|
|
| T |
44439222 |
tacttcataaaccctaat |
44439205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 16232981 - 16232936
Alignment:
| Q |
407 |
gcaattacaaactataatgaagaattgcaaattgcaatatcaaata |
452 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
16232981 |
gcaattacaaactacaatgaagaattgcaagttgaaatatcaaata |
16232936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 10259168 - 10259124
Alignment:
| Q |
408 |
caattacaaactataatgaagaattgcaaattgcaatatcaaata |
452 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
10259168 |
caattacaaactataatgaagaattacaagttccaatatcaaata |
10259124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University