View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21306_low_11 (Length: 236)
Name: NF21306_low_11
Description: NF21306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21306_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 27557284 - 27557469
Alignment:
| Q |
5 |
aaataagatttataaaagttacccaaaaatccaaaaatgataataataaatttgttattactctatccaaacaacatttagaaatgagtgcaattgaata |
104 |
Q |
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| T |
27557284 |
aaataagatttataaaagttacccaaaaat--aaaaatgataataataaatttgttattactctatccaaacaacatttagaaatgagtgcaattgaata |
27557381 |
T |
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| Q |
105 |
atttgaattgtctttgattctcttaaattctatgtaatttgtttccccaaatattaagaaatgtccatagaatataagaaaaataagaata |
195 |
Q |
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| T |
27557382 |
atttgaattgtctttgattc---taaattctatgtaatttgtttccccaaatattaagaaatgtccatagaatataagaaaaataagaata |
27557469 |
T |
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