View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21306_low_2 (Length: 551)
Name: NF21306_low_2
Description: NF21306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21306_low_2 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Original strand, 37757269 - 37757790
Alignment:
| Q |
13 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagttcaactttttcaccatcattcccttcaactccggcgccgcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37757269 |
catcatcatcagcatcatgatactcatcttcatgttcttcctcaataacaggatgaagttcaactttttcaccatcattcccttcaactccggcgccacc |
37757368 |
T |
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| Q |
113 |
gccattactctcctccggataccttacaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757369 |
gccattactctcctccggataccttacaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctc |
37757468 |
T |
|
| Q |
213 |
ttcgtcgcaccgaatccacggcttcccataatcacagcactcaatccaagccgttcaacttccaaacacaatctctccttcatatcatgatccttcacaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757469 |
ttcgtcgcaccgaatccacggcttcccataatcacagcactcaatccaagccgttcaacttccaaacacaatctctccttcatatcatgatccttcacaa |
37757568 |
T |
|
| Q |
313 |
tgtgaattttgaagggagtttctgattccaccaacggttgtgcaagatcggttgcttttgttgatgtgaaattgtcgaattcgtcttccattttttgacg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757569 |
tgtgaattttgaagggagtttctgattccaccaacggttgtgcaagatcggttgcttttgttgatgtgaaattgtcgaattcgtcttccattttttgacg |
37757668 |
T |
|
| Q |
413 |
tgattcctcggaggcgtcaccgccgtcggcggtgggggaggtgacggaaccccaatcggcgccgtagaggacggaagttggtcggacgtggaggaggatg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37757669 |
tgattcctcggaggcgtcaccgccgtcggcggtgggggaggtgacggaaccccaatcggcgccgtagaggacgtaagttggtcggacgtggaggaggatg |
37757768 |
T |
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| Q |
513 |
acggtgtcgcctggtcggagat |
534 |
Q |
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| T |
37757769 |
acggtgtcgcctggtcggagat |
37757790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1717 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 313
Target Start/End: Original strand, 397 - 572
Alignment:
| Q |
138 |
acaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctcttcgtcgcaccgaatccacggcttc |
237 |
Q |
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||||| ||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||||||| | | || | ||| || ||||||||||||| |
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| T |
397 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccatcactccctcgacgcaccgcgccaaatccacggcttc |
496 |
T |
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| Q |
238 |
ccataatcacagcactcaatccaagccgttcaacttccaaacacaatctctccttcatatcatgatccttcacaat |
313 |
Q |
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| T |
497 |
ccataatcacagcactaagaccaagacgctcaacttccagacataaccgttccttcatatcatgatccttcacaat |
572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 313
Target Start/End: Original strand, 643 - 818
Alignment:
| Q |
138 |
acaactacaacaggacaaacacaatgacgaacacaataatcactcacacttccaagcttcccattagaacttctcttcgtcgcaccgaatccacggcttc |
237 |
Q |
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||||| ||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||||||| | | || | ||| || ||||||||||||| |
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| T |
643 |
acaacaacaacaggacaaacacaatgatgcacacagtaatcactaacactcccaagcttcccatcactccctcgacgcaccgcgccaaatccacggcttc |
742 |
T |
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| Q |
238 |
ccataatcacagcactcaatccaagccgttcaacttccaaacacaatctctccttcatatcatgatccttcacaat |
313 |
Q |
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|||||||||||||||| | ||||| || |||||||||| ||| || | |||||||||||||||||||||||||| |
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| T |
743 |
ccataatcacagcactaagaccaagacgctcaacttccagacataaccgttccttcatatcatgatccttcacaat |
818 |
T |
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