View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21306_low_4 (Length: 336)
Name: NF21306_low_4
Description: NF21306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21306_low_4 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 43526 - 43835
Alignment:
| Q |
12 |
atgaagaacaattttaattgattttcggcatgaaaatggaagcatgagagagcaacaaaacnnnnnnnnnnnnnnnn-atcaacagtcatatttaaagtt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
43526 |
atgaagaacaattttaattgattttcggcatgaaaatggaagcatgagagagcaataaaacttttttttattttttttatcaacagtcatatttaaagtt |
43625 |
T |
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| Q |
111 |
aaaaagtaaactataaataaccaacaaagtatatcgcatcatgaagatcttttgttctgactcgtgtttgttttcttgacaagggcgttcaatgttttac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
43626 |
aaaaagtaaactataaataaccaacaaagtatatcgcatcatgaagatcttgtgttctgactcgtgtttgtcttcttgacaaggacgttcaatgtcttac |
43725 |
T |
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| Q |
211 |
aaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaagtttctcaaatgacagacctttcgaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43726 |
aaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaagtttctcaaataacagacctttcgaga |
43825 |
T |
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| Q |
311 |
gctatccaac |
320 |
Q |
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|||||||||| |
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| T |
43826 |
gctatccaac |
43835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 13685206 - 13685357
Alignment:
| Q |
169 |
gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc |
268 |
Q |
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| T |
13685206 |
gactcgtgttcgtctttttaacaagggcgttcaatatcctacaaactgtgttagttgtccatcacatcatgaagatcttcctcatgtatttttcaattgc |
13685305 |
T |
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| Q |
269 |
ctttttgatgtccaagtttctcaaatgacagacctttcgagagctatccaac |
320 |
Q |
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| T |
13685306 |
ccttttgctgtccaagtttggcaaatgacaggcctttggggagctatccaac |
13685357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 19234801 - 19234952
Alignment:
| Q |
169 |
gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc |
268 |
Q |
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| T |
19234801 |
gactcgtgttcgtcttcttgacaagggcgttcaatgtcctacaaactgtgttagttatccatcgcataatgaagatcttgctcatgtatttttcaattgc |
19234900 |
T |
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| Q |
269 |
ctttttgatgtccaagtttctcaaatgacagacctttcgagagctatccaac |
320 |
Q |
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| T |
19234901 |
cttttcgctatctaagtttggcaaatgacaggactttggggagctatccaac |
19234952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 11819313 - 11819178
Alignment:
| Q |
185 |
cttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaag |
284 |
Q |
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| T |
11819313 |
cttgacaagggcgttcaatgtcctacaaactgtgttagttgtccatcacatcatgaagttcttgctcatgtatttttcaattgcccttttgctgtccaag |
11819214 |
T |
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| Q |
285 |
tttctcaaatgacagacctttcgagagctatccaac |
320 |
Q |
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| T |
11819213 |
tttggcaaatgataggcctttggggagctatccaac |
11819178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 23576668 - 23576534
Alignment:
| Q |
185 |
cttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaag |
284 |
Q |
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||||||||||||| ||||||| |||||| ||||||||||||||||| ||||| | |||||| |||||||| |||||||||||| ||||| |||||||| |
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| T |
23576668 |
cttgacaagggcgctcaatgtcctacaaactgtgttagttgtccatcacatcatgaagatcttgctcatgtacttttcaattgcccttttgctgtccaag |
23576569 |
T |
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| Q |
285 |
tttctcaaatgacagacctttcgagagctatccaa |
319 |
Q |
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| T |
23576568 |
tttggcaaatgacaggccttttgggagctatccaa |
23576534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 49701638 - 49701789
Alignment:
| Q |
169 |
gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc |
268 |
Q |
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|||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| | ||| || ||||||| |||||||||||| |
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| T |
49701638 |
gactcgtgttagtcttcttaacaagggcgtttaatgtcctacaaattgtgttagttgtcaatcgcatcatgaagaccttgctcatgtttttttcaattgc |
49701737 |
T |
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| Q |
269 |
ctttttgatgtccaagtttctcaaatgacagacctttcgagagctatccaac |
320 |
Q |
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| T |
49701738 |
cccgttgttgtccaagtttggcaaatgacatgcctttggggagctatccaac |
49701789 |
T |
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