View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21307_high_1 (Length: 423)
Name: NF21307_high_1
Description: NF21307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21307_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Complemental strand, 4624971 - 4624574
Alignment:
| Q |
7 |
tccaagaatatggttcttttgagatgacttcctaaccttgtgaacacaaaagaatagggaggcctaaaatttcatcaggtaaactacaacaacaatcaat |
106 |
Q |
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| T |
4624971 |
tccaacaatatggttcttttgagatgacttcctaaccttgtgaacacaaaagaacagggaggcctaaaatttcatcaggtaaactacaacaacaatcaat |
4624872 |
T |
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| Q |
107 |
aatttcatataccttaagctcataacactaatgattcccttcaagtgttggaagctctcaatgtgatcaaaatgaaagtattttcctgtattaagtgtgc |
206 |
Q |
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| T |
4624871 |
aatttcatataccttaagctcataacactaatgattcccttcaagtgttggaagctctcaatgtgatcaaaatgaaagtattttcctgtattaagtgtga |
4624772 |
T |
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| Q |
207 |
cagaaaatcactcccttcaccaacatattgaattttcgttaaacacctagaacgtgttgggacatttgaaggtttgtaattgaaacatgaactgagcagt |
306 |
Q |
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| T |
4624771 |
cagaaaatcactcccttcaccaacatactgaattttcgttaaacacctagaacgtgttgggacatttgtaggtttgtaattgaaacatgaactgagcagt |
4624672 |
T |
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| Q |
307 |
gcatagcattcataaccaagcgaaattggactaatgaattcaacgacttattatgaagactttgaatttgaattctagcaggaacaatccttggcacc |
404 |
Q |
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| T |
4624671 |
gcatagcattcataaccaagcgaaattggactaatgaattcaacgacttattatgaagactttgaatttgaattctagcaggaacaatccttggcacc |
4624574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 40315215 - 40315293
Alignment:
| Q |
244 |
gttaaacacctagaacgtgttgggacatttgaaggtttgtaattgaaacatgaactgagcagtgcatagcattcataac |
322 |
Q |
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| T |
40315215 |
gttaaacacctaaagcatgatgagatatttggaggtctgtaattgaaacatgagttgagcagtgcataacactcataac |
40315293 |
T |
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