View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21307_low_1 (Length: 599)
Name: NF21307_low_1
Description: NF21307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21307_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 217 - 356
Target Start/End: Complemental strand, 30835475 - 30835336
Alignment:
| Q |
217 |
ttaaagaacaaatgctaattaataaattggtaatctaatgtgattgaaactatttagctaatgtagtgtatgttttacggtcgcagactagccaacaaat |
316 |
Q |
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| T |
30835475 |
ttaaagaacaaatgctaattaataaattggtaatgtaatgtgattgaaactatttagctaatgtagtgtatgttttacagttgcagactagccaacaaat |
30835376 |
T |
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| Q |
317 |
ggattttgaatgattatagtgcccttttgatgcttgcttg |
356 |
Q |
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| T |
30835375 |
ggattttgaatgattacagggccctgttgatgcttgcttg |
30835336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 217 - 356
Target Start/End: Complemental strand, 3192247 - 3192108
Alignment:
| Q |
217 |
ttaaagaacaaatgctaattaataaattggtaatctaatgtgattgaaactatttagctaatgtagtgtatgttttacggtcgcagactagccaacaaat |
316 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
3192247 |
ttaaagaacaaaggctaattaataaattggtaatgtaatgagattgaaactatttagctaatgtagtgtatgttttacagttgcagactagccaacaaat |
3192148 |
T |
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| Q |
317 |
ggattttgaatgattatagtgcccttttgatgcttgcttg |
356 |
Q |
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| T |
3192147 |
ggattttgaatgattacagggccctgttgatgcttgcttg |
3192108 |
T |
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