View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21307_low_3 (Length: 412)
Name: NF21307_low_3
Description: NF21307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21307_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 34315831 - 34315447
Alignment:
| Q |
18 |
cttattaccaaggaaatggcaaactgggtatttgatatcagcagaatccaatttaagagcatcatgaagcatctgttgattcataccagaagtatcagca |
117 |
Q |
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| T |
34315831 |
cttattgccaaggaaatggcaaactgggtatttgatatcagcagaatccaatttaagagcatcatgaagcatctgttgattcataccagaagtatcagca |
34315732 |
T |
|
| Q |
118 |
tggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaattctatgacaataatatacaacct |
217 |
Q |
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| T |
34315731 |
tggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaattctatgacaataatatacaacct |
34315632 |
T |
|
| Q |
218 |
tttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgattatctatgaaggaacttgaaag |
317 |
Q |
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| T |
34315631 |
tttggaaattcaacctgtgacacatcacccctttatctccaagattttgtacagactctacagtgtattgttcttgattatctattaaggaacttgaaag |
34315532 |
T |
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| Q |
318 |
tgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
402 |
Q |
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| T |
34315531 |
tgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
34315447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 94 - 384
Target Start/End: Complemental strand, 34251350 - 34251060
Alignment:
| Q |
94 |
tgattcataccagaagtatcagcatggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaa |
193 |
Q |
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| T |
34251350 |
tgattcatgcctgaagtatcagtatgacaaacagctagtgcctgagtttttcttccatcattagccaccaatggaaccataaaagctgttgttccatgaa |
34251251 |
T |
|
| Q |
194 |
ttctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttg |
293 |
Q |
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| T |
34251250 |
tttcatgacaataaaatacaaccttttgaaagttcaacctatgacacatcactgctttctctccaagattttgaactgactctattttgtattgttcatg |
34251151 |
T |
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| Q |
294 |
attatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
384 |
Q |
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| T |
34251150 |
tttatcaatgaaggaacttgaaagtgcttgaatattttttccaagcttagaaattgaaaatccgattaatgttcctaaggattttgcacaa |
34251060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 81 - 384
Target Start/End: Complemental strand, 34241601 - 34241298
Alignment:
| Q |
81 |
atgaagcatctgttgattcataccagaagtatcagcatggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagct |
180 |
Q |
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||||||||| ||||||||||| || ||| |||||||||||||| ||||||||| |||||||| ||||||||| |||||||| |||||| | |||||| |
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| T |
34241601 |
atgaagcatatgttgattcatgcctgaaatatcagcatggcaagtagctattgcatgagtttttgttccatcattagccaccaatggaaccttaaaagct |
34241502 |
T |
|
| Q |
181 |
gtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacag |
280 |
Q |
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| T |
34241501 |
gttgttccatgaacttcatgacaataaaatacaactttttgaaagttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattt |
34241402 |
T |
|
| Q |
281 |
tgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagc |
380 |
Q |
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| T |
34241401 |
tgtattgttcatgtttatcaatgaaggaacttgaaagtgattgaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgc |
34241302 |
T |
|
| Q |
381 |
acaa |
384 |
Q |
| |
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|||| |
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| T |
34241301 |
acaa |
34241298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 17004298 - 17004238
Alignment:
| Q |
199 |
tgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaa |
259 |
Q |
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||||||||| ||||||| |||| |||||| || || |||||||||||| |||| ||||||| |
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| T |
17004298 |
tgacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaa |
17004238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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