View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21308_high_3 (Length: 336)

Name: NF21308_high_3
Description: NF21308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21308_high_3
NF21308_high_3
[»] chr4 (2 HSPs)
chr4 (18-329)||(16988055-16988366)
chr4 (71-166)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (18-329)||(21807588-21807899)
chr2 (18-315)||(20971202-20971497)
chr2 (75-165)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (18-313)||(26465292-26465587)
chr5 (77-273)||(23884074-23884270)
chr5 (22-160)||(23958779-23958917)
chr5 (234-270)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (18-314)||(34068262-34068558)
chr6 (56-181)||(20850027-20850152)
chr6 (59-183)||(14617738-14617862)
chr6 (111-189)||(28561533-28561611)
chr6 (59-250)||(12302377-12302568)
[»] chr7 (5 HSPs)
chr7 (75-175)||(3004921-3005021)
chr7 (84-193)||(8853841-8853950)
chr7 (117-166)||(18477565-18477614)
chr7 (119-183)||(19666209-19666273)
chr7 (81-175)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (75-175)||(37737401-37737501)
chr1 (69-172)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (17-183)||(8273-8439)
[»] chr8 (2 HSPs)
chr8 (81-253)||(18551164-18551336)
chr8 (72-130)||(2998101-2998159)
[»] chr3 (2 HSPs)
chr3 (117-226)||(44667108-44667217)
chr3 (24-247)||(18963220-18963443)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 16988366 - 16988055
Alignment:
Q  18 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  16988366 tcagatggtgtagaaacaggtttggaagctaaaaatcctgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttgtgaggaat 16988267  T
Q  118 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  16988266 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcataatggctttaatatcttgaaattcagagataga 16988167  T
Q  218 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaaca 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988166 atttccagctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaaca 16988067  T
Q  318 taatgatgatgt 329  Q
    ||||||||||||    
T  16988066 taatgatgatgt 16988055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 35088897 - 35088802
Alignment:
Q  71 atcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 166  Q
    |||||| ||||||||||||||||| ||||| || |||  |   |||||||||||||| | |||||| |||||||| |  || ||||||||||||||    
T  35088897 atcaaggcaatactttctttgacagagagaaatgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgat 35088802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 21807588 - 21807899
Alignment:
Q  18 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 117  Q
    |||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21807588 tcagatggcgtagaaataggtttggaagctaaaaatcatgtattagttaaaagatcaagacaatactttctttgacaaagagagattccttgtgaagaat 21807687  T
Q  118 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807688 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 21807787  T
Q  218 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaaca 317  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807788 atttccagctaggatcacatcatcaacatacacaagtaaaattgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaaca 21807887  T
Q  318 taatgatgatgt 329  Q
    ||||||||||||    
T  21807888 taatgatgatgt 21807899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 20971202 - 20971497
Alignment:
Q  18 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 117  Q
    ||||||||||||||| ||||||| ||||| | ||| | |||||||||  |  | |||||||| || |||||||| ||||||||||| |  | ||| ||||    
T  20971202 tcagatggtgtagaatcaggttttgaagcaagaaaacatgtatcagtcta--ggtcaagacattattttctttggcaaagagagatgcactgtgatgaat 20971299  T
Q  118 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 217  Q
     ||||||||||| ||||||||| ||||| || || |||||| |||| ||||| || |||||||||||| ||  ||| || || || || ||||| |  ||    
T  20971300 aagcaacctctagaccaagaaaatatttcaattgaccaagagccttaatcttgaaggaagaatgcagattgattttgatgtcctgaaactcagaaagtga 20971399  T
Q  218 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaa 315  Q
    | | ||  | |  ||||||||||||||||| ||||| ||  |||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||    
T  20971400 agtaccaacaataatcacatcatcaacataaacaagcaaggctgtgaatgaagtatctgtcttcttaatgaagagagagtgatcagatgcagattgaa 20971497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 23682338 - 23682248
Alignment:
Q  75 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttga 165  Q
    |||||||||||||||||||| |  || || |||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  23682338 agacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 26465292 - 26465587
Alignment:
Q  18 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 117  Q
    ||||||||||||||| ||||||| | ||| | ||||| | |||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||| ||||    
T  26465292 tcagatggtgtagaagcaggttttgcagcaagaaatcctatatcagttaggagatcaagacaatattttctttggcaaagagagatgccttgtgaggaat 26465391  T
Q  118 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 217  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || |  |||| |||||||||||||||||| || ||||||||||||||||  ||    
T  26465392 gagcaacttctaaaccaagaaagtatttcaattggccaagatccttaatttctaaagcagaatgcagaatggctttgatgtcttggaattcagagagtga 26465491  T
Q  218 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattg 313  Q
    | | || |  | |||||||||||||||||| ||||| ||| |||||||||||| |   |||||||| ||||| ||||| |||||||| | ||||||    
T  26465492 agtaccagtgatgatcacatcatcaacataaacaagcaaagctgtgaatgaagtatatgtcttcttaatgaaaagagaatgatcagatgtagattg 26465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 23884074 - 23884270
Alignment:
Q  77 acaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaa 176  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||||    
T  23884074 acaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaa 23884173  T
Q  177 gaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaag 273  Q
       || |||||| |||| || |  || |||||| | |  || |||||||| || || | |||||| ||||||||||| |  | ||||||||||||||    
T  23884174 ttgtgaagaatgtctttgatgttctgaaattcataaagtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaag 23884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 23958917 - 23958779
Alignment:
Q  22 atggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgaca-aagagagattccttttgaagaatgag 120  Q
    |||||||||||| ||||||||| || |  || | ||| ||||| | ||||||||| ||||| ||||||||||| |||| | || |||| |||||| ||||    
T  23958917 atggtgtagaaagaggtttggatgcaaggaaacatgtgtcagtcagaagatcaaggcaatattttctttgacataagaaa-atcccttgtgaagagtgag 23958819  T
Q  121 caacctctaaaccaagaaagtattttaactggccaagatc 160  Q
    |||||||||||||||| |||||||| || |||||||||||    
T  23958818 caacctctaaaccaaggaagtatttcaattggccaagatc 23958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 23958705 - 23958669
Alignment:
Q  234 acatcatcaacatacacaagtaaaactgtgaatgaag 270  Q
    |||||||||||||| || |||||||||||||||||||    
T  23958705 acatcatcaacataaaccagtaaaactgtgaatgaag 23958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 34068558 - 34068262
Alignment:
Q  18 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 117  Q
    |||||||| || |||||||||||| |||| | ||  |  ||||||||||  | |||||| ||||| ||||| ||||| ||||| || ||||  |||||||    
T  34068558 tcagatggagtggaaacaggtttgcaagccagaagaccagtatcagttagcaaatcaaggcaatattttctctgacatagagaaatgccttcagaagaat 34068459  T
Q  118 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 217  Q
    ||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||||| ||||||| ||||| ||| ||    || | |||||| | |||    
T  34068458 gagcaacctctaagccaaggaagtatttcaattgaccaaggtccttgattttaaaagaggaatgcaaaatggatttgatggagtgaagttcagaaagaga 34068359  T
Q  218 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattga 314  Q
     |  || || |  ||||||||||| ||||| || ||||| || || ||||||| ||  ||||||||| |||| | ||| |||||||||| |||||||    
T  34068358 gtcaccagcaataatcacatcatccacatagactagtaacacagtaaatgaagtagtggtcttcttggtgaacaaagaatgatcagaagtagattga 34068262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 20850027 - 20850152
Alignment:
Q  56 tgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggcca 155  Q
    ||||||||| | ||||||||||||||||||||| || || | | | ||||||| |||||| ||||||| || ||||||||||||||| || ||||| |||    
T  20850027 tgtatcagtgagaagatcaagacaatactttctctggcacaaaaatattccttgtgaagagtgagcaaactttaaaccaagaaagtacttcaactgacca 20850126  T
Q  156 agatccttgatcttaaaagaagaatg 181  Q
    ||||| || || || || ||||||||    
T  20850127 agatctttaattttgaatgaagaatg 20850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 14617862 - 14617738
Alignment:
Q  59 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 158  Q
    |||||| | |||||| |||||||||||||| | | |||| || || ||||  ||||| |||||||||||||||||||| || ||||| || ||||| |      
T  14617862 atcagtgagaagatccagacaatactttctctaaaaaagtgaaatgccttgagaagagtgagcaacctctaaaccaaggaattatttcaattggcccaag 14617763  T
Q  159 tccttgatcttaaaagaagaatgca 183  Q
    ||||| ||||| ||||| |||||||    
T  14617762 tccttaatcttgaaagaggaatgca 14617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 28561611 - 28561533
Alignment:
Q  111 gaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatgg 189  Q
    |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||    
T  28561611 gaagaatgtgccacctctaatccaagaaaatatttcaactgaccaagatctttaatcttgaaggaagaatgcaggatgg 28561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 12302568 - 12302377
Alignment:
Q  59 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 158  Q
    |||||| | ||||||||  |||||||| |||||| | |  ||||||||||| || ||||| | ||| || |||  | | ||||| |||||||  ||||||    
T  12302568 atcagtgagaagatcaatgcaatacttcctttgatacaaggagattcctttagatgaatgtgaaacttcaaaatgatggaagtaatttaactaaccaaga 12302469  T
Q  159 tccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacac 250  Q
    || || ||||| || |||||||| || |||||||| |||| ||| |||||||| || ||||  || || | ||||| ||||| |||||||||    
T  12302468 tctttaatcttgaaggaagaatgtaggatggctttcatatgttgaaattcagacatggaatcaccagcaatgatcatatcattaacatacac 12302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 3005021 - 3004921
Alignment:
Q  75 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 174  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  3005021 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 3004922  T
Q  175 a 175  Q
    |    
T  3004921 a 3004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 8853950 - 8853841
Alignment:
Q  84 tttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 183  Q
    ||||| ||||||||||| |||||||  ||||||||||||| |||||| ||||| || || || || || |||||||||||||| ||||| || || ||||    
T  8853950 tttctctgacaaagagatattccttgagaagaatgagcaatctctaatccaaggaaatacttcaattgaccaagatccttgattttaaaggaggagtgca 8853851  T
Q  184 gaatggcttt 193  Q
    ||||||||||    
T  8853850 gaatggcttt 8853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 18477614 - 18477565
Alignment:
Q  117 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 166  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  18477614 tgagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgat 18477565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 19666273 - 19666209
Alignment:
Q  119 agcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 183  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||| ||||| ||||| |||||||    
T  19666273 agcaacctctaaaccaagaaaatatttcaactggcccaagtccttaatcttgaaagaggaatgca 19666209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 19813298 - 19813392
Alignment:
Q  81 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaaga 175  Q
    ||||||||||| || || || || |||| |  |||||||||||| ||||||||||| ||||||||||| |||| | |||| ||||| || |||||    
T  19813298 tactttctttggcatagggaaatcccttgttcagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaaga 19813392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 37737401 - 37737501
Alignment:
Q  75 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 174  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  37737401 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 37737500  T
Q  175 a 175  Q
    |    
T  37737501 a 37737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 13427891 - 13427994
Alignment:
Q  69 agatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatct 168  Q
    |||||||||||||| |||||||| || | |  |||||| ||   ||||| ||| |||||||  |||||||| ||||||| ||||||||||||||||||||    
T  13427891 agatcaagacaatattttctttggcatatactgattccattcttagaataagccacctctatgccaagaaaatattttagctggccaagatccttgatct 13427990  T
Q  169 taaa 172  Q
    ||||    
T  13427991 taaa 13427994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 8439 - 8273
Alignment:
Q  17 ctcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaa 116  Q
    |||||| || || ||||| |||||||||||||||   | || |||||| |  ||||| |||||||| ||| | ||||||| ||| || ||||  |||||     
T  8439 ctcagaaggagttgaaactggtttggaagctaaatgacctgaatcagtgaggagatccagacaatattttttctgacaaacagatatgccttgagaagag 8340  T
Q  117 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 183  Q
    ||||||||||||||||||||||| ||||| || ||||| |  ||||| ||||| ||||| |||||||    
T  8339 tgagcaacctctaaaccaagaaaatatttcaattggcccaagtccttaatcttgaaagaggaatgca 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 18551164 - 18551336
Alignment:
Q  81 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaat 180  Q
    ||||||||||| || | ||| || |||| |  ||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |||||   ||    
T  18551164 tactttctttggcataaagatatcccttgttcagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttat 18551263  T
Q  181 gcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaag 253  Q
    | ||||||| ||| || | ||  |||||||| |  ||||||||||||||||| | |||||| ||||| |||||    
T  18551264 gaagaatggttttgatgttttcaaattcagaaagtgaatttcctgctaggatgatatcatctacatagacaag 18551336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 2998159 - 2998101
Alignment:
Q  72 tcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaa 130  Q
    ||||||||||||||||||||| ||| |||||| |||| |   |||||||||||||||||    
T  2998159 tcaagacaatactttctttgagaaatagagatcccttctttggaatgagcaacctctaa 2998101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 44667108 - 44667217
Alignment:
Q  117 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatag 216  Q
    ||||||||||| | ||||||||| || || ||||| || | ||| |||||||| || |||| ||||||||||| ||| |||| |||||| ||||| | ||    
T  44667108 tgagcaacctcaagaccaagaaaatagttcaactgtcccaaatctttgatcttgaatgaagcatgcagaatggatttgatatgttggaactcagaaagag 44667207  T
Q  217 aatttcctgc 226  Q
    ||||||||||    
T  44667208 aatttcctgc 44667217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 18963220 - 18963443
Alignment:
Q  24 ggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaa 123  Q
    ||||||||||||||||||||||||| |   | |  |||| | | ||||||||  ||||| || ||||| || | |||||||||||  || ||||| ||||    
T  18963220 ggtgtagaaacaggtttggaagctagatgacctaaatcaataagaagatcaatgcaatatttcctttggcacaaagagattccttgagatgaatgtgcaa 18963319  T
Q  124 cctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcc 223  Q
    | ||||||||||| || ||||| ||||| |||||||| || || || || || |||||||| ||  | || |||| ||| |||||||| ||||  || ||    
T  18963320 cttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaatgacgaatgcaggatatcattgatatgttgaaattcagacatagtgttacc 18963419  T
Q  224 tgctaggatcacatcatcaacata 247  Q
     || |  |||||||||||||||||    
T  18963420 agcaattatcacatcatcaacata 18963443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University