View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21308_low_1 (Length: 834)
Name: NF21308_low_1
Description: NF21308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21308_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 11 - 817
Target Start/End: Complemental strand, 7756078 - 7755275
Alignment:
| Q |
11 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7756078 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctacaattttacacata |
7755979 |
T |
|
| Q |
111 |
aacctcaaaactcaaaattaaaacttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755978 |
aacctcaaaactcaaaattaaa-cttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcgga |
7755880 |
T |
|
| Q |
211 |
acacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755879 |
acacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcg |
7755780 |
T |
|
| Q |
311 |
gaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttgatgaacttgttaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7755779 |
gaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagaatatgcttcttcaacttggtgccttgatgaacttgttaa |
7755680 |
T |
|
| Q |
411 |
gatcgttgactgttatgaaaataatggaaaatcggttttcgttatattttataagatggaacctagcgatgttaggtatcagaaaaatagttatgaagat |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755679 |
gatcgttgactgttatgaaaataatggaaaatcggttttcgttatattt-ata-gatggaacctagcgatgttaggtatcagaaaaatagttatgaagat |
7755582 |
T |
|
| Q |
511 |
gctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattacatt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7755581 |
gctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattacatt |
7755482 |
T |
|
| Q |
611 |
gcaaggacgatgtgtaagtccccaaacatttaactaattataaggaaaatgacttgtaaactatcatctctctcagattctctcttttttagttgaatca |
710 |
Q |
| |
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|
| T |
7755481 |
gcaaggacgatgtgtaagtccccaaacatttaactaattataaggaaaatgacttgtaaactatcaactctctcagattctctcttttttagttgaatca |
7755382 |
T |
|
| Q |
711 |
ttttctcctcgcgctcctttgatatctctcattcttcatcttgtcattctatgcagctatgaatctgactttattgaaaagattgtcagagatatctcta |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7755381 |
ttttctcctcgcgctcctttgatatctctcattcttcatcttgtcattctatgcagctatgaatctgagtttattgaaaagattgtcagagatatctcta |
7755282 |
T |
|
| Q |
811 |
ctaaact |
817 |
Q |
| |
|
||||||| |
|
|
| T |
7755281 |
ctaaact |
7755275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 148 - 651
Target Start/End: Complemental strand, 7763398 - 7762894
Alignment:
| Q |
148 |
tcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcac |
247 |
Q |
| |
|
||||||||||| |||||| | || ||||||| ||||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||| | || | |
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|
| T |
7763398 |
tcatcaatggcgaatcacaatgattatttcacacacgacatatttctgagtttcagaggcggaactcgctactccttcacggatcatctctatcactctc |
7763299 |
T |
|
| Q |
248 |
ttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaat |
347 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||| |||| ||||| ||||||||||| ||||||| ||| ||||||| |||||||||||||| |
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|
| T |
7763298 |
ttctccgtcatggaatcaacgtcttcagagacgatcaaaacatcaacatcggtgatgaaatcggaacttcacttctaaaagcaattgaagcttctagaat |
7763199 |
T |
|
| Q |
348 |
ctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggtt |
447 |
Q |
| |
|
||||||||||||| |||| || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| || ||| ||||||| || |
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|
| T |
7763198 |
ctcaatcgttgtgttgtgccgtgattatgcttcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagta |
7763099 |
T |
|
| Q |
448 |
ttcgttatattttataagatggaacctagcgatgttaggta-tcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaa |
546 |
Q |
| |
|
|| ||||| ||||||||||| |||||| ||||||||||| ||||| |||||||||||| ||| || | |||||||||||| |||||||||| |||| |
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|
| T |
7763098 |
tttgttattttttataagatagaaccttcagatgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaa |
7762999 |
T |
|
| Q |
547 |
tcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagtccccaaacatttaacta |
646 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| | ||||| |||| || |
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|
| T |
7762998 |
tcggagaaggtgaaagcatggaggttggctttgaatcgtgtttgtgctctcagtggattacattgcaaagataatatgtaagttctcaaaccattaatta |
7762899 |
T |
|
| Q |
647 |
attat |
651 |
Q |
| |
|
||||| |
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|
| T |
7762898 |
attat |
7762894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 167 - 629
Target Start/End: Complemental strand, 7840050 - 7839585
Alignment:
| Q |
167 |
acgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaa |
266 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
7840050 |
acgaagacttcactcacgacgttttcctcagtttcagaggcagaactcgctactccttcaccgatcatctctaccgttcacttctccgtcacggaatcaa |
7839951 |
T |
|
| Q |
267 |
cgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgt |
366 |
Q |
| |
|
||| ||||||||| | | |||||| || |||||| | |||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
7839950 |
cgtcttcagagacaatccaaaccttaacatcggcgacgaaatcagactttcacttctacaagcaatcgaagcttctagaatttcaatcgttgttctgtgt |
7839851 |
T |
|
| Q |
367 |
aaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgt---tatgaaaataatggaaaatcggttttcgttatattttata |
463 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| || || | || || ||| | ||||| ||||||||||||| |
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|
| T |
7839850 |
aaagactacgcttcttccacttggtgccttgacgaacttgttaagatcgttgactgttactacgagatgaaagggaaaactgtttttgttatattttata |
7839751 |
T |
|
| Q |
464 |
agatggaacctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaagggaatcggagaaggtgaaagc |
563 |
Q |
| |
|
|| ||||| || |||||||| |||||| ||| || |||||| ||| || | ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7839750 |
aggtggaagcttctgatgttagacatcagagaaagagctatgaaattgcaatgattcaacatgaaaagagatttggaaaggaatcggagaaggtgaagaa |
7839651 |
T |
|
| Q |
564 |
atggaagttggctttgaatcgagtttgtgctctcagtggattacattgcaaggacgatgtgtaagt |
629 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |||||| || | | |||||||||| ||||||| |
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|
| T |
7839650 |
atggaggtctgctttgaaaagagtttgtgctcttagtggactatactacaaggacgatatgtaagt |
7839585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7840195 - 7840117
Alignment:
| Q |
11 |
catcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaac |
89 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
7840195 |
catcatcatgtagaccggttcattgtgatcccgctttcttctgacttttgaagctccacacttgatttaaaactcaaac |
7840117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 737 - 817
Target Start/End: Complemental strand, 7838871 - 7838791
Alignment:
| Q |
737 |
tctcattcttcatcttgtcattctatgcagctatgaatctgactttattgaaaagattgtcagagatatctctactaaact |
817 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||| |
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|
| T |
7838871 |
tctcattcatcatattgtatttctatgcagctatgaatctgagtttattgagaagattgtgagagacatctcagctaaact |
7838791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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