View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21308_low_3 (Length: 358)
Name: NF21308_low_3
Description: NF21308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21308_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 35094808 - 35094467
Alignment:
| Q |
17 |
aatgaaaagctgtgtggagcccctttaggagcatgttcgtcgaataagaaatcatcaataaatttgagccgtatcgtggtcgtggttcttgtaagtcttg |
116 |
Q |
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| T |
35094808 |
aatgaaaagctgtgtggagcccctttaggagcatgttcgtcgaataagaaatcatcaataaatttgagccgtatcgtggtcgtggttcttgtaagtcttg |
35094709 |
T |
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| Q |
117 |
cactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaattaggagaaggagctggagtagctgcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094708 |
cactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaattaggagaaggagctggagtagctgcaaa |
35094609 |
T |
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| Q |
217 |
caccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggtaagatcacgcgcaagcagtaataccagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35094608 |
caccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggtaagatcacgcacaagcagtaataccagt |
35094509 |
T |
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| Q |
317 |
agcagaaaaggagatagcaagttgtcctttgtgagggaagaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094508 |
agcagaaaaggagatagcaagttgtcctttgtgagggaagaa |
35094467 |
T |
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