View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21309_high_1 (Length: 638)
Name: NF21309_high_1
Description: NF21309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21309_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Complemental strand, 31474693 - 31474083
Alignment:
| Q |
18 |
gctagaacaagttttgcaggaatatcccaaggtgaataatggagtagtgctgaaagattcttttataaaacagatggaatggataatggatatgttagag |
117 |
Q |
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| T |
31474693 |
gctagaacaagttttgcaggaatatcccaaggtgaataatggagtagtgctgaaagattcttttatagaacagatggaatggataatggatatgttagag |
31474594 |
T |
|
| Q |
118 |
aaaaaattgaatggtaaatccaaagagtacagagaccttgctttgcgcaatcttttcatgatgaataataggaggcacatagaagatttacttaaaaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31474593 |
aaaaaattgaatggtaaatccaaagagtacagagaccttgctttgcgcaatcttttcatgatgaataataggaggcacatagaagatttacttaaaaggt |
31474494 |
T |
|
| Q |
218 |
gggatttggaaaccgtatttggcaacgattggttccagaaaaatcaagcaaaattccaacaagaccttgatctttatatnnnnnnntcctggaatatggt |
317 |
Q |
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| T |
31474493 |
gggatttggaaaccgtatttggcaacgattggttccagaaaaatcaagcaaaattccaacaagaccttgatctttatataaaaaaatcctggatcatggt |
31474394 |
T |
|
| Q |
318 |
gtttgagtttttgaagttggacaacaatgactatgcagcactcaatgacgatgttgcagaagatctattgaaagaaaagctaaaattgttcaacaagcaa |
417 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31474393 |
gtctgagtttttgaagttggacaacaatgactatgcggcactcaatgacgatgttgcagaagatatattgaaagaaaagctaaaattgttcaacaagcaa |
31474294 |
T |
|
| Q |
418 |
tttgaagagatgtatagagttcagtccaattggtttgtatatgataagaagcttaaggaagaaataataatatcagtgggaaataccttgctgccagtat |
517 |
Q |
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| T |
31474293 |
tttgaagagatgtacagagttcagtccaattggtttgtatatgataagaagcttaaggaagaaataataatatcagtgggaaataccttgctgccagtat |
31474194 |
T |
|
| Q |
518 |
atggaatctttattgggaggttctgtgattgtcttggtattcatgcaaatcagtatattagatatggaatgtttgagattcaagatcgccttaacaattt |
617 |
Q |
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| T |
31474193 |
atggaatctttattgggaggttccgtgattgtcttggtattcatgcaaatcagtatattagatatggaatgtttgagattcaagatcgccttaacaattt |
31474094 |
T |
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| Q |
618 |
gtttctgatga |
628 |
Q |
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||||||||||| |
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| T |
31474093 |
gtttctgatga |
31474083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 22 - 626
Target Start/End: Complemental strand, 40842249 - 40841655
Alignment:
| Q |
22 |
gaacaagttttgcaggaatatcccaaggtgaataatggagtagtgctgaaagattcttttataaaacagatggaatggataatggatatgttagagaaaa |
121 |
Q |
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| T |
40842249 |
gaacaagttttgcaggaatatcccaaggtgaataatggagtagtagtgaaagattcttttatagaacagatggaatggataatggatatgttagagaaaa |
40842150 |
T |
|
| Q |
122 |
aattgaatggtaaatccaaagagtacagagaccttgctttgcgcaatcttttcatgatgaataataggaggcacatagaagatttacttaaaaggtggga |
221 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||| | ||| |
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| T |
40842149 |
gattgacatataagtccaaagagtacagagaacttgctttgcgctatcttttcatgatgaataataggaggcacatagaagctatgattaaaagcttgga |
40842050 |
T |
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| Q |
222 |
tttggaaaccgtatttggcaacgattggttccagaaaaatcaagcaaaattccaacaagaccttgatctttatatnnnnnnntcctggaatatggtgttt |
321 |
Q |
| |
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||||||||| ||||||| || ||||||||||| | ||||||||| ||||||||||||||||||||||||||| || ||||||| ||||| |
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| T |
40842049 |
cttggaaaccatatttggtaatgattggttccaaagaaatcaagcgaaattccaacaagaccttgatctttatcaaaggtattcatggaataaagtgttg |
40841950 |
T |
|
| Q |
322 |
gagtttttgaagttggacaacaatgactatgcagcactcaatgacgatgttgcagaagatctattgaaagaaaagctaaaattgttcaacaagcaatttg |
421 |
Q |
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|| ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40841949 |
gaatttttgaagttggacaacaatgactgtgcggcactgaatggtgatgttgcagaagatatattgaaagaaaagctaaaattgttcaacaagcaatttg |
40841850 |
T |
|
| Q |
422 |
aagagatgtatagagttcagtccaattggtttgtatatgataagaagcttaaggaagaaataataatatcagtgggaaataccttgctgccagtatatgg |
521 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40841849 |
a----------agagttcagtccaattggtttgtatatgataagaagcttaaagaagaaataataatatcagtggcaaataccttgctgccagtatatgg |
40841760 |
T |
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| Q |
522 |
aatctttattgggaggttctgtgattgtcttggtattcatgcaaatcagtatattagatatggaatgtttgagattcaagatcgccttaacaatttgttt |
621 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
40841759 |
aatctttattgggaggttccgtgattgtcttggtattcatgctaatcagtgtattagatacggaatgtttgagattcaagatcgcctcaacaacttgttt |
40841660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 31405625 - 31405553
Alignment:
| Q |
223 |
ttggaaaccgtatttggcaacgattggttccagaaaaatcaagcaaaattccaacaagaccttgatctttata |
295 |
Q |
| |
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||||||||| | ||||| || ||||||||||| || || |||||||| |||||||| ||||||||||||||| |
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| T |
31405625 |
ttggaaaccatttttggtaatgattggttccaaaataacaaagcaaaaatccaacaaaaccttgatctttata |
31405553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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