View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21309_high_3 (Length: 396)
Name: NF21309_high_3
Description: NF21309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21309_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 39641973 - 39642329
Alignment:
| Q |
19 |
agaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacattggttaacataatattcatggtgttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641973 |
agaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagatgccgcctgtggctgcatcaagaacattggttaacataatattcatggtgttt |
39642072 |
T |
|
| Q |
119 |
ttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgttgtcaacggcatagg |
218 |
Q |
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| T |
39642073 |
ttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgttgtcaacggcatagg |
39642172 |
T |
|
| Q |
219 |
ttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcaccgctgccgaggagagcgttgaggtc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
39642173 |
ttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcaccactgccgaggagagtgttgaggtc |
39642272 |
T |
|
| Q |
319 |
ggaggcggagcaggtgaaagaagccatcgtgaactgaactagaatataggatctgtg |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642273 |
ggaggcggagcaggtgaaagaagccatcgtgaactgaactagaatataggatctgtg |
39642329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 46670171 - 46670496
Alignment:
| Q |
20 |
gaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacattggttaacataatattcatggtgtttt |
119 |
Q |
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| T |
46670171 |
gaaggtgttccaaaagctagggcaaaaccaaaaacatagaaaaaaataccacctattgcggcatcaagaacattggttaacataatgttcatagtgtttt |
46670270 |
T |
|
| Q |
120 |
tggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgttgtcaacggcataggt |
219 |
Q |
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|||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||| || ||||||| |
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| T |
46670271 |
tggcacgaacagaaccggcacaaagcatagcaaaacctagttgcatggcaaaaacaaggtaagctgagaatagaaggtaagtgttgtcgacagcatagga |
46670370 |
T |
|
| Q |
220 |
tgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcaccgctgccgaggagagcgttgaggtcg |
319 |
Q |
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||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||| | | |||||||||||||| ||||||| |
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| T |
46670371 |
agtgtcgatgaatttgtttgcgacggcattgaagccgccacagatgtattcggcagcggctgtggagtttgcgcttccgccgaggagagcgtggaggtcg |
46670470 |
T |
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| Q |
320 |
gaggcggagcaggtgaaagaagccat |
345 |
Q |
| |
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|||||||| |||||||||| |||||| |
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| T |
46670471 |
gaggcggaacaggtgaaagtagccat |
46670496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 17091251 - 17091441
Alignment:
| Q |
20 |
gaaggtgtgccgaaagcaaaggcaaacccgaaaatatagaaaaagaggccgcctgtggctgcatcaagaacattggttaacataatattcatggtgtttt |
119 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| | |||| | || | ||||| | || || || |||||||| || | ||| || ||||||||||| | |
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| T |
17091251 |
gaaggtgttccgaaggcaaaggcaaaaccgaagagatagtagaaaacaccgccagcagcggcgtcgagaacatttgtgagcatgatgttcatggtgttct |
17091350 |
T |
|
| Q |
120 |
tggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaagaagagaagagaaggtaggtgttgtcaac |
210 |
Q |
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| T |
17091351 |
tagcacgaactgaaccagcacagagcatggcaaaaccaagttgcatagagaagacaaggtaagctgagaataaaagataggtgttgtcaac |
17091441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 35416308 - 35416432
Alignment:
| Q |
83 |
tcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaaggtaag |
182 |
Q |
| |
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||||| |||||||| | ||| || ||||| ||||||||||| |||||||| || || || ||||| || ||||| || ||||||||||| || | |||| |
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| T |
35416308 |
tcaaggacattggtgagcatgatgttcatagtgtttttggctcgaacggagccagcgcagagcatagcgaaaccaagctgcatggcaaagactaaataag |
35416407 |
T |
|
| Q |
183 |
aagagaagagaaggtaggtgttgtc |
207 |
Q |
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||||||||||||||||||||||| |
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| T |
35416408 |
ctgagaagagaaggtaggtgttgtc |
35416432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 25545082 - 25545202
Alignment:
| Q |
78 |
ctgcatcaagaacattggttaacataatattcatggtgtttttggcacgaacggaacctgcacaaagcatggcaaaaccgagttgcatggcaaaaacaag |
177 |
Q |
| |
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||||||||| |||||||| | ||| || ||||||| ||||||||||| || || |||||||| | ||||||||| || |||||||| |||| || | |
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| T |
25545082 |
ctgcatcaactacattggtgagcattatgttcatggcatttttggcacggacagatcctgcacatatcatggcaaagcctagttgcattacaaagactaa |
25545181 |
T |
|
| Q |
178 |
gtaagaagagaagagaaggta |
198 |
Q |
| |
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||| | ||||||||||||||| |
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| T |
25545182 |
gtaggtagagaagagaaggta |
25545202 |
T |
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