View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21309_low_2 (Length: 630)
Name: NF21309_low_2
Description: NF21309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21309_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 2940427 - 2940234
Alignment:
| Q |
7 |
tcgaagaatatgacactatagcgaagaataaaacaatgtcatacttaaatgatgaaaaaattcataggaaaaataagaaagaaacaccaggtctatgtga |
106 |
Q |
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| T |
2940427 |
tcgaacaatacggcactatagcgaagaataaaacaatttcatacttaaatgatgaaaaaattcataggaaaaataagaaagaaacaccaggtctatgtga |
2940328 |
T |
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| Q |
107 |
gaacgattt--nnnnnnnnnnnnnnnnnnngagatacattcaatgtatatgggtgattctgaaacaaaacaatgatctaaagtcactcatcttc |
198 |
Q |
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| T |
2940327 |
gaacgatttaaaaaaaaaaaaaaaaaaaaagagatacattcgatgtatatgggtgattctgaaacaaaacaatggtctaaagtcactcatcttc |
2940234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 426
Target Start/End: Complemental strand, 2940169 - 2940006
Alignment:
| Q |
263 |
tagacggaggttataagagacataaatttcaannnnnnnnnn-ctaactgttcctaataaaaaatacaaatctacgctacatgnnnnnnnnnnnntccaa |
361 |
Q |
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| T |
2940169 |
tagacggaggttataagagacataaatttcattttttttgtttctaactgttgctaataaaaaatacaaatttacgctacatgaaaaaaaaaaa-tccaa |
2940071 |
T |
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| Q |
362 |
aattgctttaattttgaccaattcgattgcagccagcaacccttagttgcagcagggtgcacttt |
426 |
Q |
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| T |
2940070 |
aaccgctctgattttgaccaattcgattgcagccagcaatccttagttgcagcagggtgcacttt |
2940006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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