View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21309_low_3 (Length: 485)

Name: NF21309_low_3
Description: NF21309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21309_low_3
NF21309_low_3
[»] chr8 (18 HSPs)
chr8 (14-413)||(5886324-5886726)
chr8 (14-256)||(5842183-5842425)
chr8 (14-256)||(5848893-5849135)
chr8 (333-468)||(5885849-5885984)
chr8 (336-468)||(5848240-5848372)
chr8 (336-454)||(5841544-5841662)
chr8 (336-454)||(5847698-5847816)
chr8 (257-411)||(5842004-5842158)
chr8 (257-411)||(5848714-5848868)
chr8 (307-369)||(5920134-5920196)
chr8 (274-419)||(5958747-5958883)
chr8 (274-419)||(5983289-5983425)
chr8 (8-132)||(5959043-5959170)
chr8 (73-217)||(5920289-5920436)
chr8 (14-135)||(5947957-5948081)
chr8 (14-135)||(5983558-5983682)
chr8 (306-415)||(5947683-5947792)
chr8 (421-455)||(5920066-5920100)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 5886726 - 5886324
Alignment:
Q  14 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886726 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagt 5886627  T
Q  114 tcctacccattcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagcttttgatct 213  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5886626 tcccacccaatcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatct 5886527  T
Q  214 caatacaagtcaattggaaaaccaaatttcaaaaagtggcacctcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataat 313  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886526 caatccaagtcaattggaaaatcaaatttcaaaaagtggcacctcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataat 5886427  T
Q  314 ttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctgg---attcatctgattccaaggaac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||| |   |||||||||||||||||||||    
T  5886426 ttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaac 5886327  T
Q  411 atg 413  Q
    |||    
T  5886326 atg 5886324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 5842425 - 5842183
Alignment:
Q  14 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagt 113  Q
    |||||||||| ||||||||||||||| || | ||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||  |    
T  5842425 catcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcaatgccagat 5842326  T
Q  114 tcctacccattcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagcttttgatct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5842325 tcctacccaatcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatct 5842226  T
Q  214 caatacaagtcaattggaaaaccaaatttcaaaaagtggcacc 256  Q
    |||| |||||||||||||||| ||||||||||||| |||||||    
T  5842225 caatccaagtcaattggaaaatcaaatttcaaaaaatggcacc 5842183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 5849135 - 5848893
Alignment:
Q  14 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagt 113  Q
    |||||||||| ||||||||||||||| || | ||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||| ||||||||||||  |    
T  5849135 catcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcaatgccagat 5849036  T
Q  114 tcctacccattcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagcttttgatct 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5849035 tcctacccaatcaaaatccaattatacctgaaatagtactaccatctaatccttcctcttgtgaagatacatggtcattggattgtgtagctcttgatct 5848936  T
Q  214 caatacaagtcaattggaaaaccaaatttcaaaaagtggcacc 256  Q
    |||| |||||||||||||||| ||||||||||||| |||||||    
T  5848935 caatccaagtcaattggaaaatcaaatttcaaaaaatggcacc 5848893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 333 - 468
Target Start/End: Complemental strand, 5885984 - 5885849
Alignment:
Q  333 ttgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaaggaacatgaagctcttagtattattta 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5885984 ttgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaagaaacatgaagctcttagtattattta 5885885  T
Q  433 tccacaagatcaaaatatggaagtggaccaattgga 468  Q
    ||||||||||||||||||||||||||||||||||||    
T  5885884 tccacaagatcaaaatatggaagtggaccaattgga 5885849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 5848372 - 5848240
Alignment:
Q  336 tgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaaggaacatgaagctcttagtattatttatcc 435  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  5848372 tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctcttagtattatttatcc 5848273  T
Q  436 acaagatcaaaatatggaagtggaccaattgga 468  Q
    ||||| ||||||||||||||   ||||||||||    
T  5848272 acaaggtcaaaatatggaagctaaccaattgga 5848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 454
Target Start/End: Complemental strand, 5841662 - 5841544
Alignment:
Q  336 tgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaaggaacatgaagctcttagtattatttatcc 435  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  5841662 tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctcttagtattatttatcc 5841563  T
Q  436 acaagatcaaaatatggaa 454  Q
    ||||| |||||||||||||    
T  5841562 acaaggtcaaaatatggaa 5841544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 454
Target Start/End: Complemental strand, 5847816 - 5847698
Alignment:
Q  336 tgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaaggaacatgaagctcttagtattatttatcc 435  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  5847816 tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctcttagtattatttatcc 5847717  T
Q  436 acaagatcaaaatatggaa 454  Q
    ||||| |||||||||||||    
T  5847716 acaaggtcaaaatatggaa 5847698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 411
Target Start/End: Complemental strand, 5842158 - 5842004
Alignment:
Q  257 tcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatc 356  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||| |||||| ||| ||||||| |||||||||||||| |||||||||    
T  5842158 tcaatcaaccaaagttcattaatgcagcaatatgatcaatatcatgat---cataacttggttgaacatgaagccattgtgcctaaattactcaatgatc 5842062  T
Q  357 aaagccttgaggaacatgattgttgcatcctgg---attcatctgattccaaggaaca 411  Q
    ||||||||||  |  |||  ||| ||||||| |   ||||||||||||||||||||||    
T  5842061 aaagccttgaaaattatgcatgtagcatcctagattattcatctgattccaaggaaca 5842004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 411
Target Start/End: Complemental strand, 5848868 - 5848714
Alignment:
Q  257 tcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatc 356  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||| |||||| ||| ||||||| |||||||||||||| |||||||||    
T  5848868 tcaatcaaccaaagttcattaatgcagcaatatgatcaatatcatgat---cataacttggttgaacatgaagccattgtgcctaaattactcaatgatc 5848772  T
Q  357 aaagccttgaggaacatgattgttgcatcctgg---attcatctgattccaaggaaca 411  Q
    ||||||||||  |  |||  ||| ||||||| |   ||||||||||||||||||||||    
T  5848771 aaagccttgaaaattatgcatgtagcatcctagattattcatctgattccaaggaaca 5848714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 5920196 - 5920134
Alignment:
Q  307 tcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgagga 369  Q
    |||| |||||||| |||||||||||  | ||||||||||||||||||||||||||||||||||    
T  5920196 tcatgatttggttgaacttgaagccactctgcctaaattagtcaatgatcaaagccttgagga 5920134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 5958883 - 5958747
Alignment:
Q  274 attaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggaacat 373  Q
    |||||||||||||||||||||||||||||||         |||||| ||||||| |    ||||||| ||||||  ||| ||||||||||||||||  ||    
T  5958883 attaatgcaacaatatgatcaatatcatgat---------ttggttgaacttgatgaaactgtgcctgaattagaaaatcatcaaagccttgaggattat 5958793  T
Q  374 gattgttgcatcctggattcatctgattccaaggaacatgaagctc 419  Q
    | |||| ||||||| ||||||||| ||||| | |||||||||||||    
T  5958792 gcttgtagcatcctagattcatctaattcccaagaacatgaagctc 5958747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 5983425 - 5983289
Alignment:
Q  274 attaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggaacat 373  Q
    |||||||||||||||||||||||||||||||         |||||| ||||||| ||   | ||||| ||||||||||| ||||||||||||||||  ||    
T  5983425 attaatgcaacaatatgatcaatatcatgat---------ttggttgaacttgatgctactatgcctgaattagtcaatcatcaaagccttgaggattat 5983335  T
Q  374 gattgttgcatcctggattcatctgattccaaggaacatgaagctc 419  Q
    | ||||  |||||| ||||||||| ||||  | |||||||||||||    
T  5983334 gcttgtaacatcctagattcatctaattcgcaagaacatgaagctc 5983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 5959170 - 5959043
Alignment:
Q  8 catcatcatcaagatctcctatacctttcaaattcatttccaaatctgcaatgt---tttcaacaacctgatacaaaggtagacatcaataacaatttca 104  Q
    ||||| |||||||||  |||||||| |||||  |||| |||||||| |||| ||   ||||| |||  |||||||||||||||||||||| || |||  |    
T  5959170 catcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaaggtagacatcaatgaccattata 5959071  T
Q  105 atgccaagttcctacccattcaaaatcc 132  Q
    ||||||| ||||| | ||||||||||||    
T  5959070 atgccaatttccttcacattcaaaatcc 5959043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 5920436 - 5920289
Alignment:
Q  73 tgatacaaaggtagacat---caataacaatttcaatgccaagttcctacccattcaaaatccaattatacctgaaatagtactacca---tctaatcct 166  Q
    ||||||||||||||||||   ||||||| |||  |||| ||| ||||| | |||||||||||||||   ||| |||||  ||| ||||   |||||||||    
T  5920436 tgatacaaaggtagacatgatcaataaccattataatggcaatttccttcacattcaaaatccaat---accagaaatcttacaaccaatgtctaatcct 5920340  T
Q  167 tcctcttgtgaagatacatggtcattggattgtgtagcttttgatctcaat 217  Q
    ||| ||| |||||||||||||||||||| |||| || || || ||||||||    
T  5920339 tccccttatgaagatacatggtcattgggttgtttacctcttcatctcaat 5920289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 5948081 - 5947957
Alignment:
Q  14 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgt---tttcaacaacctgatacaaaggtagacatcaataacaatttcaatgcca 110  Q
    |||||||||  |||||||| |||||  |||| ||||||||| ||| ||   ||||| |||  |||||||||||||||||||||| || |||  |||||||    
T  5948081 catcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagacatcaatgaccattataatgcca 5947982  T
Q  111 agttcctacccattcaaaatccaat 135  Q
    | ||||  | |||||||||||||||    
T  5947981 atttccctctcattcaaaatccaat 5947957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 5983682 - 5983558
Alignment:
Q  14 catcaagatctcctatacctttcaaattcatttccaaatctgcaatgt---tttcaacaacctgatacaaaggtagacatcaataacaatttcaatgcca 110  Q
    |||||||||  |||||||| |||||  |||| ||||||||| ||| ||   ||||| |||  |||||||||||||||||||||| || |||  |||||||    
T  5983682 catcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggtagacatcaatgaccattataatgcca 5983583  T
Q  111 agttcctacccattcaaaatccaat 135  Q
    | ||||  | |||||||||||||||    
T  5983582 atttccctcacattcaaaatccaat 5983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 5947792 - 5947683
Alignment:
Q  306 atcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctggattcatctgattccaa 405  Q
    ||||| |||||||| ||||||| ||   ||||||| |||||| |||| ||||||||||||||||  | | || | ||||||| ||||||||| ||||| |    
T  5947792 atcatgatttggttgaacttgatgctactgtgcctgaattagccaatcatcaaagccttgaggattacgcttctagcatcctagattcatctaattccca 5947693  T
Q  406 ggaacatgaa 415  Q
     |||||||||    
T  5947692 agaacatgaa 5947683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 455
Target Start/End: Complemental strand, 5920100 - 5920066
Alignment:
Q  421 tagtattatttatccacaagatcaaaatatggaag 455  Q
    |||||||| ||||||||||||||||||||||||||    
T  5920100 tagtattacttatccacaagatcaaaatatggaag 5920066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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