View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21309_low_4 (Length: 397)
Name: NF21309_low_4
Description: NF21309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21309_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 68 - 361
Target Start/End: Complemental strand, 3759383 - 3759090
Alignment:
| Q |
68 |
cttagaaaaacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattagtactaat |
167 |
Q |
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| T |
3759383 |
cttagaaagacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattattactaat |
3759284 |
T |
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| Q |
168 |
caataattaactaattaactaacacgagtagttccatacacaggtagctcctcgcaatacctactatctccaaacccactaaaatgatccaattcaaaaa |
267 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
3759283 |
caataattaactaattaactaacacgggtagttccatacacaggaagctcctcacaatacctactatctccaaacacactcaaatgatccaactcaaaaa |
3759184 |
T |
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| Q |
268 |
gatctgaacttgcacaacttgccacatcatcatcatcttcatcctcttcttcattttgattgatacacaaatcctttaataaaactaaatcgtc |
361 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3759183 |
gatcagaacttgcacaacttgccacatcatcatcatcttcatcctcttcttcattttgattaatacacaaatcctttaataaaactaaatcgtc |
3759090 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 48345535 - 48345489
Alignment:
| Q |
261 |
tcaaaaagatctgaacttgcacaacttgccacatcatcatcatcttc |
307 |
Q |
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| T |
48345535 |
tcaaaaagatctgaacttgaacaacttgatacatcatcatcaacttc |
48345489 |
T |
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