View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2130_high_1 (Length: 377)

Name: NF2130_high_1

Description: NF2130

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2130_high_1

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 310; E-Value: 1e-174

Query Start/End: Original strand, 12 - 377

Target Start/End: Original strand, 1528931 - 1529296

Alignment:

Q	12	atgaagataatcttagtttttggaaagaaaaaagaatattaagaaaatcttgaatgagtgatttgacatagaataatttgaacaaagaaatcgacttgtt	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1528931	atgaagataatcttattttttggaaagaaaaaagaatattaagaaaatcttgaatgagtgatttgacatagaataatttgaacaaagaaatcgacttgtt	1529030	T

Q	112	ggagtgaattggaaattgagatatgagcaaattgaaaggtatatatggtcgatcatacgagacatattaaaacattggtgcatttatccttcaaagtcta	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1529031	ggagtgaattggaaattgagatatgagcaaattgaaaggtatatatggtcgatcatacgagacatattaaaacattggtgcatttatccttcaaagtcta	1529130	T

Q	212	agcatgtcattgtgcattagtaatagaataatctctaacatttttaattcnnnnnnnnnnnnttgttacacgcgcaagccgtaaaaccgagacactgcat	311	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	1529131	agcatgtcattgtgcattagtaatagaataatctctaacatttttaattcaaaaataaaaaattgttacatgcgcaagccgtaaaaccaagacactgcat	1529230	T

Q	312	tgtaatatgtatacattaaatgttcatagattccaactcaactcggcaatttcaatattattgaac	377	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1529231	tgtaatatgtatatattaaatgttcatagattccaactcaactcagcaatttcaatattattgaac	1529296	T

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Target: chr8; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 99 - 151

Target Start/End: Complemental strand, 1460237 - 1460185

Alignment:

Q	99	aaatcgacttgttggagtgaattggaaattgagatatgagcaaattgaaaggt	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	1460237	aaatcgacttgttgaagcgaattgaaaatcgagatatgagcaatttgaaaggt	1460185	T

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Target: chr8; HSP #3

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 203 - 258

Target Start/End: Complemental strand, 1464452 - 1464396

Alignment:

Q	203	caaagtctaagcatgtca-ttgtgcattagtaatagaataatctctaacatttttaa	258	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	1464452	caaagtctaaggatgtcacttgtgcactagtaatagaataatctcgaatatttttaa	1464396	T

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Target: chr8; HSP #4

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 99 - 151

Target Start/End: Original strand, 1556686 - 1556738

Alignment:

Q	99	aaatcgacttgttggagtgaattggaaattgagatatgagcaaattgaaaggt	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	1556686	aaatcgacttgttgaagcgaattgaaaatcgagatatgagcaatttgaaaggt	1556738	T

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Target: chr8; HSP #5

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 292 - 373

Target Start/End: Complemental strand, 23037919 - 23037838

Alignment:

Q	292	gtaaaaccgagacactgcattgtaatatgtatacattaaatgttcatagattccaactcaactcggcaatttcaatattatt	373	Q
		\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \| \|\| \|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23037919	gtaaaagcaagacactacgttgtaatatgtatatgttaaatgtccataaagtctaactcaattggacaatttcaatattatt	23037838	T

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