View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2130_high_8 (Length: 207)
Name: NF2130_high_8
Description: NF2130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2130_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 9859452 - 9859609
Alignment:
| Q |
33 |
tgcctcattttctgcttccttatgaattcgtatattctcttcaacaatgatgttgttttttcccgacttatgtactctctttttcttagaaggtgaactt |
132 |
Q |
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| T |
9859452 |
tgcctcattttctgcttccttatgaattcgtatattctcctcaacaatgatgttgttttttcctgacttacgtactctcttttttttagaaggtgaactt |
9859551 |
T |
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| Q |
133 |
ttcaaatctgagtcgctgatttggaccttcgatgtaacattattttttaaccgatttt |
190 |
Q |
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| T |
9859552 |
ttcaaatctgagtcactgatttggaccttcgatgtaacattattttttaaccgatttt |
9859609 |
T |
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Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 24351715 - 24351559
Alignment:
| Q |
16 |
aaaacattttgcttccatgcctcattttctgcttccttatgaattcgtatattctcttcaacaatgatgttgttttttcccgacttatgtactctctttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24351715 |
aaaacattttgcttccatgcctcattttctgcttccttatgaattcgtatattctcttcaacaatgatgttgtgttttcccga----------------- |
24351633 |
T |
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| Q |
116 |
tcttagaaggtgaacttttcaaatctgagtcgctgatttggaccttcgatgtaacattattttttaaccgatttt |
190 |
Q |
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| T |
24351632 |
-cttagaaggtgaacttttcaaatctgagtcgctgatttggaccttcgatgtaacattattttttaaccgatttt |
24351559 |
T |
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