View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2130_low_1 (Length: 419)

Name: NF2130_low_1
Description: NF2130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2130_low_1
NF2130_low_1
[»] chr2 (3 HSPs)
chr2 (222-404)||(16371167-16371349)
chr2 (55-191)||(16371399-16371535)
chr2 (1-58)||(16371564-16371620)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 222 - 404
Target Start/End: Complemental strand, 16371349 - 16371167
Alignment:
Q  222 acacaatctgcataaaaaattaattaattaaccagcccctctcaaagagcattgtaatagtccccactcccccacttgcatttaactttttcttatagtt 321  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16371349 acacaatctacataaaaaattaattaattaaccagcccctctcaaagagcattgtaatagtccccactcccccatttgcatttaactttttcttatagtt 16371250  T
Q  322 tcttaaaaatttgatcaaaaatgacaaatttattttgcacgaaatgtccaaataataaaatccctattattgtatgagaaaag 404  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16371249 tcttgaaaatttgatcaaaaatgacaaatttattttgcacgaaatgtccaaataataaaatccctattattgtatgagaaaag 16371167  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 16371535 - 16371399
Alignment:
Q  55 tatagggcattatacttttcatattgaagtgaatttggcattgtcgcccaaaactaaaattaaatggacttttagacctttaa-tttagtttttaccttc 153  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  16371535 tatagggcattatacttctcatattgaagtgaatttggcattgtcgcccaaaacaaaaattaaatggac-tttagacctttaattttagtttttaccttc 16371437  T
Q  154 aagccggcttcgagtttatagtaaaattttgtctaatt 191  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16371436 aagccggcttcgagtttatagtaaaattttgtctaatt 16371399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16371620 - 16371564
Alignment:
Q  1 ttataaaatgtctatcaaatatcctttatttgctattattttttaattattgtttata 58  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16371620 ttataaaatgtctatcaaatatcctt-atttgctattattttttaattattgtttata 16371564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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