View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2130_low_3 (Length: 283)
Name: NF2130_low_3
Description: NF2130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2130_low_3 |
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| [»] scaffold1519 (2 HSPs) |
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Alignment Details
Target: scaffold1519 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: scaffold1519
Description:
Target: scaffold1519; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 258 - 70
Alignment:
| Q |
79 |
ccctgagtttgtggggggaaggataaggtctatagagtacttaaactcgttaatattgtatttctgccagctttgcagttagttacacttccatttgtat |
178 |
Q |
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| T |
258 |
ccctgagtttgtggggggaaggataaggtctatagagtacttaaactcgttaatattgtatttctgccagctttgcagttagttacactcccatttgtat |
159 |
T |
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| Q |
179 |
gccagctcatcagttggttacatttgtctttctgttgaaggcagttgcaaactgtacgaaattattgtatcctataaataccaagttct |
267 |
Q |
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| T |
158 |
gccagctcatcagttggttacagttgtctttctgttgaaggcagttgcaaactgtacgaaattattgtatcctataaataccaagttct |
70 |
T |
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Target: scaffold1519; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 436 - 365
Alignment:
| Q |
11 |
cataggtaactgaacattttctttgtgggagaaaaggttcttagcaagtccttaattgtttcctatgtccct |
82 |
Q |
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| T |
436 |
cataggtaactgaacattttctttgtgggagaaagggttcttagcaagtccttaattgtttcctatgtccct |
365 |
T |
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