View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2130_low_5 (Length: 255)

Name: NF2130_low_5
Description: NF2130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2130_low_5
NF2130_low_5
[»] chr1 (2 HSPs)
chr1 (21-222)||(3134724-3134925)
chr1 (49-157)||(11049207-11049315)
[»] chr5 (3 HSPs)
chr5 (47-157)||(39097203-39097313)
chr5 (106-157)||(25548457-25548508)
chr5 (49-117)||(6951325-6951393)
[»] chr4 (2 HSPs)
chr4 (119-203)||(2635056-2635140)
chr4 (46-106)||(54549375-54549435)
[»] chr2 (3 HSPs)
chr2 (128-174)||(36374238-36374284)
chr2 (124-156)||(36256127-36256159)
chr2 (49-117)||(42740974-42741042)
[»] chr3 (2 HSPs)
chr3 (49-93)||(4526153-4526197)
chr3 (119-151)||(29371974-29372006)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 3134724 - 3134925
Alignment:
Q  21 atcattcatgtaaaaatgggtaaacttttaaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaatagaatcaattacac 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3134724 atcattcatgtaaaaatgggtaaaattttaaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaagtagaatcaattacac 3134823  T
Q  121 ttaaaagcaattaaatatgtcaaaatcaattctacacttttaaagtcaattttgttacatataaaaatgaaactaaacatacagagagattagtcactca 220  Q
    ||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  3134824 ttaaaagcaatcaaatatgtcaaaatcaattttacaccttcaaagtcaattttgttacatataaaaatgaaaccaaacatacaaagagattggtcactca 3134923  T
Q  221 tt 222  Q
    ||    
T  3134924 tt 3134925  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 11049315 - 11049207
Alignment:
Q  49 taaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaatagaatcaattacacttaaaagcaattaaatatgtcaaaatca 148  Q
    ||||||| |||||||||| ||||||||  |||||||| |||||||| || ||| || ||||||| |||  |||  |||||||| ||| |||||  |||||    
T  11049315 taaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattctactcgaaagcaatgaaacatgtctgaatca 11049216  T
Q  149 attctacac 157  Q
    |||||||||    
T  11049215 attctacac 11049207  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 39097313 - 39097203
Alignment:
Q  47 tttaaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaatagaatcaattacacttaaaagcaattaaatatgtcaaaat 146  Q
    ||||||||||||||| |||| ||||| ||| || ||||||||||||| ||| ||| || |||||||||||  || | ||| |||  ||| ||||||||||    
T  39097313 tttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttagcttcaagtagaatcaattctacctgaaaccaaccaaacatgtcaaaat 39097214  T
Q  147 caattctacac 157  Q
    |||||||||||    
T  39097213 caattctacac 39097203  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 25548508 - 25548457
Alignment:
Q  106 tagaatcaattacacttaaaagcaattaaatatgtcaaaatcaattctacac 157  Q
    |||||||||||  ||||||||||||| ||| |||||| ||||||||||||||    
T  25548508 tagaatcaattttacttaaaagcaatcaaacatgtcataatcaattctacac 25548457  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 6951325 - 6951393
Alignment:
Q  49 taaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaatagaatcaatta 117  Q
    |||||||||||||| ||| ||||| ||  |||||||| |||||||| || ||| || ||||||||||||    
T  6951325 taaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatta 6951393  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 2635140 - 2635056
Alignment:
Q  119 acttaaaagcaattaaatatgtcaaaatcaattctacacttttaaagtcaattttgttacatataaaaatgaaactaaacataca 203  Q
    ||||||||||||| ||| ||||||||||||||| ||||||| || | ||||||||| | | | ||||| |||||| |||||||||    
T  2635140 acttaaaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacataca 2635056  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 54549375 - 54549435
Alignment:
Q  46 ttttaaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaat 106  Q
    |||||||||||||| |||||| ||||| ||| || |||||||| |||||||||||| ||||    
T  54549375 ttttaaatttatgtataaaaatcaattctataattaaaagttataaatcttatcttcaaat 54549435  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 36374284 - 36374238
Alignment:
Q  128 caattaaatatgtcaaaatcaattctacacttttaaagtcaattttg 174  Q
    |||||||| ||||||||||||||| ||||| |||||| |||||||||    
T  36374284 caattaaacatgtcaaaatcaattatacacctttaaaatcaattttg 36374238  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 36256127 - 36256159
Alignment:
Q  124 aaagcaattaaatatgtcaaaatcaattctaca 156  Q
    |||||||| ||||||||||||||||||||||||    
T  36256127 aaagcaatcaaatatgtcaaaatcaattctaca 36256159  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 42741042 - 42740974
Alignment:
Q  49 taaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaaatagaatcaatta 117  Q
    |||||||  ||||||||| ||||| ||  |||||||| ||||||||||| ||| || ||||||||||||    
T  42741042 taaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatta 42740974  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 4526197 - 4526153
Alignment:
Q  49 taaatttatgtgtaaaaaccaattttatgatcaaaagttacaaat 93  Q
    ||||||| |||||||||| ||||||||  ||||||||||||||||    
T  4526197 taaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaaat 4526153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 29372006 - 29371974
Alignment:
Q  119 acttaaaagcaattaaatatgtcaaaatcaatt 151  Q
    ||||||||||||| |||||||||||||||||||    
T  29372006 acttaaaagcaatcaaatatgtcaaaatcaatt 29371974  T

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