View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2130_low_9 (Length: 243)
Name: NF2130_low_9
Description: NF2130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2130_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 35409293 - 35409072
Alignment:
| Q |
3 |
gatatggcagctccaatagctattttactattggtttgaataaaaccagcacaaagaagattgtaacatccggttgcttgataagagtcactctgcatca |
102 |
Q |
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| T |
35409293 |
gatatggcagctccaatagctattttactatttgtttgaataaaaccagcacaaagaagattgtaacatccggttgcttgataagagtcactctgcatca |
35409194 |
T |
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| Q |
103 |
ccaaataaacaactatgtaagatttataaagaacaaaaaatttacaactaaattaattacatcagaataacatagctaattatagtttaaacctaattaa |
202 |
Q |
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| T |
35409193 |
ccaaataaacaactatgtaagatttataaagaacaaaaaatttacaactaaattaattacatctgaataacttagctaattatagtttaaacctaattaa |
35409094 |
T |
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| Q |
203 |
ttctgcgtagatagttcggtta |
224 |
Q |
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|||||| ||||||||||||||| |
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| T |
35409093 |
ttctgcatagatagttcggtta |
35409072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 48018259 - 48018351
Alignment:
| Q |
6 |
atggcagctccaatagctattttactattggtttgaataaaaccagcacaaagaagattgtaacatccggttgcttgataagagtcactctgc |
98 |
Q |
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|||| ||||||||| ||||| || ||||| ||||||| |||||||||||||||||| ||||| ||||| ||||||||||| | |||||||||| |
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| T |
48018259 |
atggaagctccaatggctatcttgctatttgtttgaacaaaaccagcacaaagaaggttgtagcatccagttgcttgatatgtgtcactctgc |
48018351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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