View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21310_high_2 (Length: 300)
Name: NF21310_high_2
Description: NF21310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21310_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 49463473 - 49463202
Alignment:
| Q |
11 |
atcatcactaaaatcaaaatcattgattgtctttcgttgaaagtttatggtaatagttttatcatttgtttatactcttgcagcttatcacgaatgacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49463473 |
atcatcactaaaatcaaaatcattgattgtcttttgttgaaagtttatggtaatagttttatcatttgtttatactcttgcagcttatcacgaatgacaa |
49463374 |
T |
|
| Q |
111 |
cttcgtaagtgtttatcaccgagtcttatctcaaaatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaag |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49463373 |
cttcgtaagtgtttatcaccgagtcttatctcataatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaag |
49463274 |
T |
|
| Q |
211 |
tcaaaggtttatggtcctattaaggaactgctttcagaagaaaacccaccaatctacaaagacattaccata |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49463273 |
tcaaaggtttatggtcctattaaggaactgctttcagaagaaaacccaccaatctacaaagacattaccata |
49463202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 13014825 - 13015077
Alignment:
| Q |
20 |
aaaatcaaaatcattgattgtctt--tcgttgaaagtttatggtaatagttttatcatttgtttatactcttgcagcttatcacgaatgacaacttcgta |
117 |
Q |
| |
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|||| |||||||||||||| |||| || |||||||||| |||||||| ||||||||||| | |||| |||| || |||||| | |||||||| || ||| |
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| T |
13014825 |
aaaaacaaaatcattgatt-tcttcatcattgaaagtttgtggtaataattttatcattt-tgtatattcttacaacttatcgcaaatgacaagtttgta |
13014922 |
T |
|
| Q |
118 |
agtgtttatcaccgagtcttatctcaaaatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaagg |
217 |
Q |
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||||||| ||||||||| ||||| ||||| ||| | ||| ||||||||||||||||||||| ||||||| | ||||||||| ||||||| |||||||| |
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| T |
13014923 |
agtgtttttcaccgagtattatcacaaaacatatgttcgaacatttctgtagcaagcttctttatgaattcacgtgacccaattgaaggtacgtcaaagg |
13015022 |
T |
|
| Q |
218 |
tttatggtcctattaaggaactgctttcagaagaaaacccaccaatctacaaagacattaccataa |
283 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
13015023 |
tttatggtcctattaatga-----------aagaaaacccaccaatctacaaagacgttaccataa |
13015077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 1094892 - 1095130
Alignment:
| Q |
47 |
ttgaaagtttatggtaatagttttatcatttgtttatac--tcttgcagcttatcacgaatgacaacttcgtaagtgtttatcaccgagtcttatctcaa |
144 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||||| || |||||||||| ||||||||||||||| ||| |
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| T |
1094892 |
ttgaaagtttgtggtaatagttttatcatttttttatacactcttgcagcttatcacaaatgacaagtttgtaagtgtttttcaccgagtcttatcacaa |
1094991 |
T |
|
| Q |
145 |
aatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgcttt |
244 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||| || |||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
1094992 |
aacataggcccgagaatttctgtagcgagcttctttctggattctcgtgacccaattgaaggtacatcaaaggtttatggtcctattaaggagctgcttt |
1095091 |
T |
|
| Q |
245 |
cagaagaaaacccaccaatctacaaagacattaccataa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
1095092 |
cagaagaaaacccaccaatctacaaagacattaccataa |
1095130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 25221318 - 25221270
Alignment:
| Q |
218 |
tttatggtcctattaaggaactgctttcagaagaaaacccaccaatcta |
266 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||| |||||||||||||| |
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|
| T |
25221318 |
tttatggtcctattaaagaattggtctcagaagagaacccaccaatcta |
25221270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 26173128 - 26173176
Alignment:
| Q |
218 |
tttatggtcctattaaggaactgctttcagaagaaaacccaccaatcta |
266 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||| |||||||||||||| |
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|
| T |
26173128 |
tttatggtcctattaaagaattgttatcagaagagaacccaccaatcta |
26173176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 19891909 - 19892113
Alignment:
| Q |
79 |
tttatactcttgcagcttatcacgaatgacaacttcgtaagtgtttatcaccgagtcttatctcaaaatataggcccgagaatttctgtagcaagcttct |
178 |
Q |
| |
|
||||||| |||||||||||| | ||||||| || |||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||| |
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| T |
19891909 |
tttatacggttgcagcttatctcaaatgacaggtttgtaagtgtttatcaccgagtcttatcacagaacattggcccaagaatttcagtagcaagcttct |
19892008 |
T |
|
| Q |
179 |
ttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcagaagaaaacccaccaatctacaaagacattac |
278 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
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| T |
19892009 |
ttgtgaattctcgtgaaccaattgaaggtacatcaaaggtttatggtcctattaaggagctcctttcagaagaaaaccctccaatctacaaagacattac |
19892108 |
T |
|
| Q |
279 |
cataa |
283 |
Q |
| |
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||||| |
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|
| T |
19892109 |
cataa |
19892113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 278
Target Start/End: Original strand, 19846917 - 19847145
Alignment:
| Q |
50 |
aaagtttatggtaatagttttatcatttgtttatactcttgcagcttatcacgaatgacaacttcgtaagtgtttatcaccgagtcttatctcaaaatat |
149 |
Q |
| |
|
||||||| || ||| | ||||||||||| | ||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||| | ||| || |
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|
| T |
19846917 |
aaagtttgtgttaacaattttatcatttttgtatactcttgcagcttatcacaaatgacaagtttgtaagtgttcatcaccgagtcttatcaccaaacat |
19847016 |
T |
|
| Q |
150 |
aggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaaggtttatggtcctattaaggaactgctttcagaa |
249 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||| ||||| ||||||||| |||||| ||||| |||| ||||||||||||||| ||| |||||||| |
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| T |
19847017 |
aggcccaagaatttctgtagcaacattctttctgagttctcgtgacccaattgaaggtgcatcaaaagtttttggtcctattaaggagctgatttcagaa |
19847116 |
T |
|
| Q |
250 |
gaaaacccaccaatctacaaagacattac |
278 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
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|
| T |
19847117 |
gcaaacccaccaatctacaaagacattac |
19847145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 29464717 - 29464983
Alignment:
| Q |
20 |
aaaatcaaaatcattgattgtctt--tcgttgaaagtttatggtaatagttttatcatttgttt--atactcttgcagcttatcacgaatgacaacttcg |
115 |
Q |
| |
|
||||| ||||||||||||| |||| || |||||||||| |||| | |||||| |||||| ||| |||| ||||||||||| | |||||||| || | |
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| T |
29464717 |
aaaattaaaatcattgatt-tcttcatcattgaaagtttgtggtgacagttttgtcatttttttgtatacctatgcagcttatctcaaatgacaagtttg |
29464815 |
T |
|
| Q |
116 |
taagtgtttatcaccgagtcttatctcaaaatataggcccgagaatttctgtagcaagcttctttgtgaattctcctgacccaatcgaaggtaagtcaaa |
215 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || || || |||||||||||||||||||||||| ||||||||| ||||||||| ||||| | ||||| |
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|
| T |
29464816 |
taagtgttttacaccgagtcttatcacaaaacattggtccaagaatttctgtagcaagcttctttctgaattctcgtgacccaattgaaggaacatcaaa |
29464915 |
T |
|
| Q |
216 |
ggtttatggtcctattaaggaactgctttcagaagaaaacccaccaatctacaaagacattaccataa |
283 |
Q |
| |
|
| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
29464916 |
gatttatggtcctattaaggagctgatttcagaagaaaacccggcaatctacaaagatattaccataa |
29464983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 33761721 - 33761627
Alignment:
| Q |
88 |
ttgcagcttatcacgaatgacaacttcgtaagtgtttatcaccgagtcttatctcaaaatataggcccgagaatttctgtagcaagcttctttgt |
182 |
Q |
| |
|
||||||||||| || ||||||| ||| ||||||||||||||| || ||||| ||||||| ||||| |||||||| |||||||||||||||| |
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| T |
33761721 |
ttgcagcttataacaaatgacatgttcacaagtgtttatcaccgggttttatccaaaaatattggccctagaatttccatagcaagcttctttgt |
33761627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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