View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21310_high_3 (Length: 274)
Name: NF21310_high_3
Description: NF21310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21310_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 30336959 - 30337116
Alignment:
| Q |
94 |
agtagtatataacaacacaaatcacccacattccattcatcttttccatttcccaaaatccaaaacact----gaatcaatggcttcaacaataacacaa |
189 |
Q |
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| T |
30336959 |
agtagtatataacaatacaa-tcacccacattccattcatcttttccatttcccaaaatccaaaacactcactgaatcaatgggttcaacaa---cacaa |
30337054 |
T |
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| Q |
190 |
gcactgataatacttgctttctcatacatttgcttatcatccatctttctctggaattacaa |
251 |
Q |
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| T |
30337055 |
gcactgataatacttgctttctcatacatttgcttatcatccatctttctctggaattacaa |
30337116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 30336730 - 30336813
Alignment:
| Q |
16 |
cagccacatagtggaataaaatacatt-----gtttgtggttttgttctttctccatgcacctccacctgtcctcccttcaata |
94 |
Q |
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| T |
30336730 |
cagccacatagtggaataaaatacattatattgtttgtggttttgttctttctccatgcacctccacctgtcctcccttcaata |
30336813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 30325370 - 30325479
Alignment:
| Q |
143 |
ttcccaaaatccaaaacact----gaatcaatggcttcaacaataacacaagcactgataatacttgctttctcatacatttgcttatcatccatctttc |
238 |
Q |
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| T |
30325370 |
ttcccaaaatccaaaacactcactgaatcaatgggttcaacaa---cacaagcactaataatgctggctttctcatacattttcttaacattcatccttc |
30325466 |
T |
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| Q |
239 |
tctggaattacaa |
251 |
Q |
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| T |
30325467 |
tctggaattacaa |
30325479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 30327900 - 30327961
Alignment:
| Q |
98 |
gtatataacaacacaaatcacccacattccattcatcttttccatttcccaaaatccaaaacac |
161 |
Q |
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| T |
30327900 |
gtatataacaaca-aaaccacccacatttcattcatcttttcca-atcccagaatccaaaacac |
30327961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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