View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21310_low_1 (Length: 331)
Name: NF21310_low_1
Description: NF21310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21310_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 40895155 - 40895467
Alignment:
| Q |
1 |
aatgtgacaaatatga--tgtgtccaaatatattactagttgttatattttaaaac-acttaattggattttggcgttttttgctagtgctggatggtag |
97 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | |||| | || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40895155 |
aatgtgacaaatatgagatgtgtccaaatatattactagaagaaatatgatgttaccacttaattggattttggcgttttttgctagtgctggatggtag |
40895254 |
T |
|
| Q |
98 |
gcaacatctatcgtagaagcatgcatagtgggaaagttattaaagacgtactcaccaacttgaagacaacatcatgctacaatatcacctacttgatgtt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40895255 |
gcaacatctatcgtagaagcatgcatagtgggaaagttattaa-gacgtactcaccagcttgaagacaacaacatgctacaatatcacctacttgatgtt |
40895353 |
T |
|
| Q |
198 |
cagtgccgatcctaaagcttcagcacaaacttctttctagttctagtttgtaggtcagtagtatgacccctatatatgtttatattaatcattgcagtat |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40895354 |
cagtgccgatcctaa-gcttcagcacaaacttctttctagttctagtttgtaggtcagtagtatgacccctatatatgtttatattaatcattgcagtat |
40895452 |
T |
|
| Q |
298 |
cttaatcctctaact |
312 |
Q |
| |
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||||||||||||||| |
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| T |
40895453 |
cttaatcctctaact |
40895467 |
T |
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