View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21310_low_3 (Length: 322)
Name: NF21310_low_3
Description: NF21310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21310_low_3 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 24478045 - 24477772
Alignment:
| Q |
28 |
aaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagta |
127 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24478045 |
aaatcttataatctatgcttggaaaacactatataaagagttagaatgcaaacttaagcaatcacagtaactagctatcactcttccaaggaactgagta |
24477946 |
T |
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| Q |
128 |
cagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctatattagtccaagtcatggacagcagccaccat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24477945 |
cagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatctatattagtccaagtcatggacagcaggcaccat |
24477846 |
T |
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| Q |
228 |
attattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
24477845 |
attattccaaatcacctccatattactacaagttcccacctccgccatctctatcacctccacctccctatgtc |
24477772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 24421866 - 24421690
Alignment:
| Q |
19 |
gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg |
118 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24421866 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
24421767 |
T |
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| Q |
119 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
195 |
Q |
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| T |
24421766 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
24421690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 24469857 - 24470033
Alignment:
| Q |
19 |
gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg |
118 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24469857 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
24469956 |
T |
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| Q |
119 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
195 |
Q |
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| T |
24469957 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
24470033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 24421589 - 24421488
Alignment:
| Q |
203 |
ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtcc |
302 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| | |||| ||| || ||| |||| ||||||| |
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| T |
24421589 |
ccaagtcatggacaacagccaccatattatttcaaatcacctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtcc |
24421490 |
T |
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| Q |
303 |
ac |
304 |
Q |
| |
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|| |
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| T |
24421489 |
ac |
24421488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 24470134 - 24470235
Alignment:
| Q |
203 |
ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacctccaactccctatgtcc |
302 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| | |||| ||| || ||| |||| ||||||| |
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| T |
24470134 |
ccaagtcatggacaacagccaccatattatttcaaatcacctccatattactacaaatccccacctccaccttctccatcgccaccacctccatatgtcc |
24470233 |
T |
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| Q |
303 |
ac |
304 |
Q |
| |
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|| |
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| T |
24470234 |
ac |
24470235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 24406701 - 24406619
Alignment:
| Q |
203 |
ccaagtcatggacagcagccaccatattattccaaatcacctccatattactacaagttcccacctccgctatctctatcacc |
285 |
Q |
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||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| | ||||| |||||| |
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| T |
24406701 |
ccaagtcatggccagcagccaccatattatttcaaaccacctccatattactacaagaccccacctccaccatctccatcacc |
24406619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 4117 - 4293
Alignment:
| Q |
19 |
gaaattaagaaatcttataatctatgcttgggcaacactatacaaagagtgggaatgcaaacttaagcaatcacagtaactagctatcactcttccaagg |
118 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4117 |
gaaattaagaaatcttataattcaagcttgggcaacactatataaagagttggaatgcaaacataagcaatcacagtaactagctatcactcttccaagg |
4216 |
T |
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| Q |
119 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4217 |
aactgagtacagaaatacacattcttaaaaaagatgggaacctcatttgggttgaggcatttgcctcaactcatcta |
4293 |
T |
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