View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21311_high_2 (Length: 475)
Name: NF21311_high_2
Description: NF21311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21311_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 6499527 - 6499079
Alignment:
| Q |
11 |
ttcattagttaaacagaaaatgcaatcaaatgagatcagaaacatttcagtatcacagtgtagaattaactagcttaaaaaagttcggcttctatttagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6499527 |
ttcattagttaaacagaaaatgcaatcaaatgagatcagaaacatttcagtatcacagtgtagaattaactagcttaaaaaagttcggcttctatttagt |
6499428 |
T |
|
| Q |
111 |
gctaataataggaactgactttgctttgcttgttgtnnnnnnnnnnnntggctcaaattatgtaaattatctaaacaagtaacaaatactgctctcagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6499427 |
gctaataataggaactgactttgctttgcttgttgtaaaaataaaaaatggctcaaattatgtaaattatctaaacaagtaacaaatactgctctcagca |
6499328 |
T |
|
| Q |
211 |
caatagaaaagattgtctagcaatatatgaaattggaagctgaagtacataatcttgtgttgtgattatactttttatttgaacaagtaacaaatggaat |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6499327 |
caatagaaaagattgtctcgcaatatatgaaattggaagctgaagtacataatcttgtgttgtgattatactctttatttgaacaagtaacaaatggaat |
6499228 |
T |
|
| Q |
311 |
ttttagtattagactcttgaacaaattttccaattacagttgcattattatatccaccatgagacagcttatgttaccacttaccagttgtctgaactct |
410 |
Q |
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| T |
6499227 |
ttttagtattagactcttgaacaaattttccaattacagttgcattattatatccaccatgagacagcttatgttaccacttaccagttgtctgaactct |
6499128 |
T |
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| Q |
411 |
gacgttaacacggttttctgaaggatgaggaatgctgtacccacaaaat |
459 |
Q |
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| T |
6499127 |
gacgttaacacggttttctgaaggatgaggaatgctgtacccacaaaat |
6499079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 31736996 - 31736543
Alignment:
| Q |
1 |
ataagaaaacttcattagttaaacagaaaatgcaatcaaatgagatcagaaacatttcagtatcacagtg----tagaattaactagcttaaaaaagttc |
96 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
31736996 |
ataagaaaacttcattagttgaacagaaaatgcaatccaatgagatcagaaacttttcagtatcacaatagagatagaattaactcgcttaaaaaagttt |
31736897 |
T |
|
| Q |
97 |
ggcttctatttagtgctaataataggaactgactttgctttgcttgttgtnnnnnnnnnnnntggctcaaattatgtaaattatctaaa-caagtaacaa |
195 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
31736896 |
ggcttctatccagtgctaataataggaactgactttgctttgcttgttgtaaaaataaaaaatggctcaaattatgtaaattatctaaaacaagtaacaa |
31736797 |
T |
|
| Q |
196 |
atactgctctcagcacaatagaaaagattgtctagcaatatatgaaattggaagctgaagtacataatcttgtgttgtgattatactttttatttgaaca |
295 |
Q |
| |
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|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31736796 |
atactggtc--agcacaatagaaaagattgtctaccaatatatgaaattggaagctgaagtacataatcttgtgttgtgattatactctt-----gaaca |
31736704 |
T |
|
| Q |
296 |
agtaacaaatggaatttttagtattagactcttgaacaaattttccaattacagttgcattattatatccaccatgagacagcttatgttaccacttacc |
395 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||| | || | |||||||||||||||||||||||||| |
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| T |
31736703 |
agtaacaaattaaatttttggtattagactgttgaacaaattttccaattacagctgcattatttt---caacgtgagacagcttatgttaccacttacc |
31736607 |
T |
|
| Q |
396 |
agttgtctgaactctgacgttaacacggttttctgaaggatgaggaatgctgtacccacaaaat |
459 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31736606 |
agttgtctggactctgacattaacacggttttctgaaggatgaggaatgctgtacccacaaaat |
31736543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 47463432 - 47463388
Alignment:
| Q |
415 |
ttaacacggttttctgaaggatgaggaatgctgtacccacaaaat |
459 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
47463432 |
ttaacacgattttctgaaggatgaggaatgctgtaaccacaaaat |
47463388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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