View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21311_high_3 (Length: 427)
Name: NF21311_high_3
Description: NF21311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21311_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 39048715 - 39048547
Alignment:
| Q |
32 |
acaaaaaataatttccccttcatcacataaaattcgttatctatctataaaagtgaagtttgggaaagagggagggatgaatttatgaaagatgatttgt |
131 |
Q |
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| T |
39048715 |
acaaaaaataatttccccttcatcacataaaattagttatgtatctataaaagtgaagtttgggaaagagggagggatgaatttatgaaagatgatttgt |
39048616 |
T |
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| Q |
132 |
caagattgaaagaatccaaatacaatttgatgaggcacccaagattattctactctcacaaatgtacta |
200 |
Q |
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| T |
39048615 |
caagattgaaagaatccaaatacaatttgatgaggcacccaagattattctactttcacaaatgtacta |
39048547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 3048574 - 3048474
Alignment:
| Q |
323 |
cacaaggaatgaggtccaaacataaagtgtataataannnnnnnnacaagacataaagtgtagaataataaacatgctactcagcaagagaataatctac |
422 |
Q |
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| T |
3048574 |
cacaaggaatgaggtccaaacataaagtgtataataattttttttacaagacataaagtgtagaataataaacatgctactcaacaagagaataatctac |
3048475 |
T |
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| Q |
423 |
c |
423 |
Q |
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| T |
3048474 |
c |
3048474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 33465633 - 33465679
Alignment:
| Q |
377 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
423 |
Q |
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| T |
33465633 |
aaagtgtagaataataagcatgctactcaaaaagagtataatctacc |
33465679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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