View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21311_high_4 (Length: 408)
Name: NF21311_high_4
Description: NF21311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21311_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 42843223 - 42843615
Alignment:
| Q |
1 |
ttgcataaacaaaaagtgctttcggaagaggagactttcaagttgaagattcaaatcgagaagagtgagaatcatcatgattatgtgagcaaagaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
42843223 |
ttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagcatgataatgtgagcaaagaattga |
42843322 |
T |
|
| Q |
101 |
acctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843323 |
acctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaa |
42843422 |
T |
|
| Q |
201 |
tgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtagctaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843423 |
tgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtagctaat |
42843522 |
T |
|
| Q |
301 |
gaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagctt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843523 |
gaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagctt |
42843615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 42843199 - 42843352
Alignment:
| Q |
94 |
gaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagc |
193 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| | ||||| |||| ||||||||||| |||||||||||| || ||| |||||| ||||| |
|
|
| T |
42843199 |
gaattgaagctgaaagagaaggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagc |
42843298 |
T |
|
| Q |
194 |
ttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaa |
247 |
Q |
| |
|
|| ||||||| ||| |||||| ||||||||||||||||| | ||||||| |
|
|
| T |
42843299 |
atgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaa |
42843352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 42834652 - 42834743
Alignment:
| Q |
302 |
aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagctt |
393 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||| || ||||| ||||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
42834652 |
aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagctt |
42834743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 42819276 - 42819342
Alignment:
| Q |
92 |
aagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa |
158 |
Q |
| |
|
|||||||||| ||||||||| | ||| || |||||||||||||| ||| | || ||||||||||||| |
|
|
| T |
42819276 |
aagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa |
42819342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 12627796 - 12627995
Alignment:
| Q |
40 |
aagttgaagattcaaatcgagaagagtgagaatcatcatgattatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttt |
139 |
Q |
| |
|
||||||||| || |||| ||||| |||||| | | | |||| ||||| || ||||| |||| ||||||||| | ||| || ||||| ||| |||| || |
|
|
| T |
12627796 |
aagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgtt |
12627895 |
T |
|
| Q |
140 |
taaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgca |
239 |
Q |
| |
|
| || ||||||||||||| ||||||||||| || ||| ||||| | | ||||| |||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
12627896 |
cagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttgca |
12627995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 30924602 - 30924490
Alignment:
| Q |
272 |
atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac |
371 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| | |||||||||||| | |||||| ||| | |||| ||||||||| ||||||| | | ||| || |
|
|
| T |
30924602 |
atttggtggaacaattggaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagac |
30924503 |
T |
|
| Q |
372 |
tcgtcaattgcaa |
384 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30924502 |
tcgtcaattgcaa |
30924490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University