View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21311_low_5 (Length: 210)
Name: NF21311_low_5
Description: NF21311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21311_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 29435030 - 29435194
Alignment:
| Q |
18 |
gagagtatcatgatggttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaact |
117 |
Q |
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| T |
29435030 |
gagagtatcatgatggttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaact |
29435129 |
T |
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| Q |
118 |
ctacttgaaacctaccacatgatccacatgtgttaatttttcatatttcattggatgttcatgca |
182 |
Q |
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| T |
29435130 |
ctacttgaaacctaccacatgatccacacgtgttaatttttcatatttcattggttgttcatgca |
29435194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 29468252 - 29468395
Alignment:
| Q |
17 |
tgagagtatcatgatggttgtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaac |
116 |
Q |
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||||||| ||||||||||||||||| | |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
29468252 |
tgagagtctcatgatggttgtagctgcacttgttccaaattttctcatgggaatcattacaggagctggaatcattgtaagaacaaatgg---cgaaaat |
29468348 |
T |
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| Q |
117 |
tctacttgaaacctaccacatgatccacatgtgttaatttttcatat |
163 |
Q |
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| T |
29468349 |
tctacttgaaacctaccacatgatccccatgtgttaatttgtcatat |
29468395 |
T |
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