View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21312_high_1 (Length: 896)
Name: NF21312_high_1
Description: NF21312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21312_high_1 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 97 - 879
Target Start/End: Original strand, 11471588 - 11472402
Alignment:
| Q |
97 |
taaaatttagaatgtccgattagaaacttctgcaatgcgtatggtggtttttctttttcatatttaattctggannnnnnnnn-aaataaaaaattgatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11471588 |
taaaatttagaatgtccgattagaaacttctgcaatgcgtatggtagtttttctttttcatatttaattctggattttttttttaaataaaaaattgatg |
11471687 |
T |
|
| Q |
196 |
agatgaaga---------tcttggattaaggatgaagatgaagatttgtacatgacacatcactactaaacaaccacataagcagtttttaacagagttt |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471688 |
agatgaagaagatgaagatcttggattaaggatgaagatgatgatttgtacatgacacatcactactaaacaaccacataagcagtttttaacagagttt |
11471787 |
T |
|
| Q |
287 |
ta-aggaaaaggtaacgtcgcaaacattgt------------gtaacttaaaggatcaatttaaaatttaaaaaatttaaaggaccgatctgatacaaag |
373 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
11471788 |
tataggaaaatgtaacgtcgcaaacattgtcgtaaatattgtgtaacttaaaggatcaatttaaaatttaaaaaatttaaaggatcgatccaatacaaa- |
11471886 |
T |
|
| Q |
374 |
tgtaaaatttaaaggaccctagaaaatatttgacctttcttttatttgcagttaagaaatcataattttaaaagtgaattgtcacttcaaatatttacta |
473 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471887 |
tgtaaaacttaaaggaccctaggagatatttgacctttcttttatttgcggttaagaaatcataattttaaaagtgaattgtcacttcaaatatttacta |
11471986 |
T |
|
| Q |
474 |
tgaagagtcaaatctatacatgtttttgttttactttgttagtgaatttcatatttggcactg----------ttattttttaggggggcattgttaact |
563 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
11471987 |
tgaaaagtcaaatctatacatgtttttgttttactttgttagtgaatttcatatttggcactgttatttcattttatttttgaggggggcattgttaact |
11472086 |
T |
|
| Q |
564 |
taatgccttctttatatgcaattgcttttaataattgttgctttaaacagatgatccacatgaggtttgtgtcacaaaattggaacctttcatgggcaat |
663 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472087 |
taatgctttctttatatgcaattgcttttaataattgttgctttaaacagatgatcaacacgaggtttgtgtcacaaaattggaacctttcatgggcaat |
11472186 |
T |
|
| Q |
664 |
cctagcactagtgttattgtcaagcacaccattctcatcagctacttttaggaagatnnnnnnntatatccaaacacaagattttttctctcctaagatt |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11472187 |
cctagcactagtgttattgtcaagcacaccattctcatcagctacttttaggaagacaaaaaaatatatccaaacacaagtttttttctctcctaagatt |
11472286 |
T |
|
| Q |
764 |
gaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatg |
863 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
11472287 |
gaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaagtagttaatg |
11472386 |
T |
|
| Q |
864 |
aatcagggaattcagt |
879 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11472387 |
aatcagggaattcagt |
11472402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 563 - 877
Target Start/End: Original strand, 11478479 - 11478792
Alignment:
| Q |
563 |
ttaatgccttctttatatgcaattgcttttaataattg--ttgctttaaacagatgatccacatgaggtttgtgtcacaaaattggaacctttcatgggc |
660 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||| || | ||||||||| | | ||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
11478479 |
ttaatgacttctatatatgcaattgcttttaattatttgttttgtataaacagatca---agatgaggtttgtatcacaaacaaggaaccttttatgggc |
11478575 |
T |
|
| Q |
661 |
aatcctagcactagtgttattgtcaagcacaccattctcatcagctacttttaggaagatnnnnnnntatatccaaacacaagattttttctctcctaag |
760 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
11478576 |
aatcctagcactagtgttgttgtcaagcacaccattctcatcatatgcttttaggaagaccaaaaaaattattcaaacacaagtttttttctctcccaag |
11478675 |
T |
|
| Q |
761 |
attgaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttg |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||| | || | ||||||||||||| |||||| |
|
|
| T |
11478676 |
attgaactaagtccaggatctgtttcaaataaaatatattatgatgttgattttccaagtggtcatatttcagtcaaaaatttctttgctgaagtagttg |
11478775 |
T |
|
| Q |
861 |
atgaatcagggaattca |
877 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
11478776 |
atgaatcagggcattca |
11478792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 616 - 879
Target Start/End: Original strand, 11484802 - 11485065
Alignment:
| Q |
616 |
gatccacatgaggtttgtgtcacaaaattggaacctttcatgggcaatcctagcactagtgttattgtcaagcacaccattctcatcagctacttttagg |
715 |
Q |
| |
|
|||| ||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||| ||| |||| |
|
|
| T |
11484802 |
gatcaacatgaggtttgtatcacagactaggaacctttcatgggcaatcctagcactagtgttgttatcaagcacactattctcattagctgcttctagg |
11484901 |
T |
|
| Q |
716 |
aagatnnnnnnntatatccaaacacaagattttttctctcctaagattgaactaagtccaggatctgtttcaaataaattttattatg-atgctgatttt |
814 |
Q |
| |
|
|||| |||| |||||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||||||| | | ||||| ||| ||||||| |
|
|
| T |
11484902 |
aagaccaaaaaaaatattcaaacaaaagttttcttctctcccaagattgaactaaatccaggatctgtttcaaataaagtat-ttatggatgttgatttt |
11485000 |
T |
|
| Q |
815 |
ccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatgaatcagggaattcagt |
879 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11485001 |
ccaagaggtcatatttcactcaagagtttctttgctgaagtagttaatgaatcagggaattcagt |
11485065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 11471545 - 11471441
Alignment:
| Q |
1 |
aattcatttctcaagttcagtatttcacaaaatccaattcagaaaaatgctttaatgtaaaatggattcggttagaacattgatatagtacaaatgtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471545 |
aattcatttctcaagttcagtatttcacaaaatccaattcagaaaaatgctttcatgtaaaatggattcggttagaacattgatatagtacaaatgtaaa |
11471446 |
T |
|
| Q |
101 |
attta |
105 |
Q |
| |
|
||||| |
|
|
| T |
11471445 |
attta |
11471441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 755 - 876
Target Start/End: Original strand, 11462094 - 11462215
Alignment:
| Q |
755 |
cctaagattgaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaa |
854 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||| |||||||||| ||| |||||||| ||||||||| |||| || ||||| ||||||| |
|
|
| T |
11462094 |
cctaagattgaattaagtccaggatcaatttcaaacaaattctattatgatgttgaatttccaaggggtcatattgcactcaaaagttttaatgctgaac |
11462193 |
T |
|
| Q |
855 |
tagttgatgaatcagggaattc |
876 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
11462194 |
tagtagatgaatcagggaattc |
11462215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 455 - 533
Target Start/End: Original strand, 11484694 - 11484773
Alignment:
| Q |
455 |
tcacttcaaatatttactatgaag-agtcaaatctatacatgtttttgttttactttgttagtgaatttcatatttggca |
533 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||||| |||||||||||| |
|
|
| T |
11484694 |
tcacttcaaatatttactataaaggagtcaaatctatatatgttttcatattacttagtaagtgaatatcatatttggca |
11484773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 616 - 709
Target Start/End: Original strand, 11461955 - 11462048
Alignment:
| Q |
616 |
gatccacatgaggtttgtgtcacaaaattggaacctttcatgggcaatcctagcactagtgttattgtcaagcacaccattctcatcagctact |
709 |
Q |
| |
|
|||| ||||||||||| | || ||| |||||| ||||||||||||||| ||| ||||||||| ||||| ||||||||| || |||||||||| |
|
|
| T |
11461955 |
gatcaacatgaggtttttatctcaagattggatgctttcatgggcaatcttagtactagtgttggtgtcatgcacaccatgcttatcagctact |
11462048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 752 - 876
Target Start/End: Original strand, 21546372 - 21546496
Alignment:
| Q |
752 |
tctcctaagattgaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctg |
851 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||||||||||| | |||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
21546372 |
tctcccaagattgaactaaatccaggatttgtttcaaataaagtgtattatgatgttgagtttccaagaggtcatatttcactcaagagtttcaatgctg |
21546471 |
T |
|
| Q |
852 |
aaatagttgatgaatcagggaattc |
876 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
21546472 |
agctagttgatgatgcagggaattc |
21546496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 21546068 - 21546138
Alignment:
| Q |
444 |
aaagtgaattg-tcacttcaaatatttactatgaaga-gtcaaatctatacatgtttttgttttactttgt |
512 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| ||||| |||||| ||||| ||||||||||||| |
|
|
| T |
21546068 |
aaagtgaattgatcactttcaatatttactatgaagaagtcaagtctatatttgtttatgttttactttgt |
21546138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 752 - 876
Target Start/End: Original strand, 47041 - 47165
Alignment:
| Q |
752 |
tctcctaagattgaactaagtccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctg |
851 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||| ||| | || ||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
47041 |
tctccaaagattgaactgagaccaggatttgtttcaaacaaagtatactatgatgttgagtttccaagaggccatatttcactcaagagtttcaatgctg |
47140 |
T |
|
| Q |
852 |
aaatagttgatgaatcagggaattc |
876 |
Q |
| |
|
|| ||||||||||| |||| ||||| |
|
|
| T |
47141 |
aactagttgatgaagcaggaaattc |
47165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 797 - 865
Target Start/End: Complemental strand, 38244048 - 38243980
Alignment:
| Q |
797 |
tattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatgaa |
865 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
38244048 |
tattatgatattgattttccaagaggtcatattgcactcaagagtttcaatgctgaagtagttgatgaa |
38243980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 796 - 874
Target Start/End: Complemental strand, 38239081 - 38239003
Alignment:
| Q |
796 |
ttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatgaatcagggaat |
874 |
Q |
| |
|
|||||||||| || |||||||||||||||| | |||| ||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
38239081 |
ttattatgatattggttttccaagaggtcatgtagcactcaagagtttcaatgctgaagtagttgacgaatcagggaat |
38239003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 788 - 865
Target Start/End: Complemental strand, 38221209 - 38221132
Alignment:
| Q |
788 |
aataaattttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatgaa |
865 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||| |
|
|
| T |
38221209 |
aataaatattattatgatattgattttccaagaggtcatgtagcaatcaagagtttccatgctgaagtagttgatgaa |
38221132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 32702444 - 32702523
Alignment:
| Q |
317 |
taacttaaaggatcaatttaaaatttaaaaaatttaaaggaccgatctgatacaaagtgtaaaatttaaaggaccctagaa |
397 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||| |||| | |||||| |||||| |||||| ||||||||| |
|
|
| T |
32702444 |
taacttaaaggaccaatttaaaactttaaaaacttaaaggactgatccggtacaaa-cgtaaaacttaaagaaccctagaa |
32702523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 796 - 864
Target Start/End: Complemental strand, 38227582 - 38227514
Alignment:
| Q |
796 |
ttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatga |
864 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||| ||||||||| ||||||| |||||||||| |
|
|
| T |
38227582 |
ttattatgatattgattttccaagagggcatatagcactaaagagtttcaatgctgaagtagttgatga |
38227514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 865
Target Start/End: Complemental strand, 38215162 - 38215093
Alignment:
| Q |
796 |
ttattatgatgctgattttccaagaggtcatatttcacttaagagtttctttgctgaaatagttgatgaa |
865 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||| ||||||||| ||||||| | ||||||||| |
|
|
| T |
38215162 |
ttattatgatattgattttccaagaggtcatgtagcactcaagagtttcaatgctgaagttgttgatgaa |
38215093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 39853641 - 39853572
Alignment:
| Q |
321 |
ttaaaggatcaatttaaaatttaaaaaatttaaaggaccgatctgatacaaagtgtaaaatttaaaggacc |
391 |
Q |
| |
|
|||||| |||||| |||||||| | ||||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
39853641 |
ttaaagaatcaatctaaaattttagaaatttaaaggacatatccgatacaaa-tgtaaaatttaaaggacc |
39853572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 826
Target Start/End: Complemental strand, 17434732 - 17434679
Alignment:
| Q |
773 |
ccaggatctgtttcaaataaattttattatgatgctgattttccaagaggtcat |
826 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
17434732 |
ccaggatcagttataaataaattttattatgatattgattttccaaaaggtcat |
17434679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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