View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21312_low_2 (Length: 856)
Name: NF21312_low_2
Description: NF21312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21312_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 36763139 - 36763545
Alignment:
| Q |
13 |
gatattatggataatcacggtctaaattagggcagcgttgcggttgcagagacatcaaaaccaagaactttgattcgcagcttaaatttctgtccaaatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36763139 |
gatattatggataatcacggtctaaattagggcagcgttgcggttgcagagacatcaaaaccaagaactttgattcgcagcctaaatttcggtccaaatg |
36763238 |
T |
|
| Q |
113 |
acggtggcagacctaaattatatcaaaaccacagtaattatcttaaaattattgtgtatgaatgttatgtctgnnnnnnnatgacaggaaggaggagatg |
212 |
Q |
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| T |
36763239 |
acggtggcagacctaaattatatcaaaaccacaataattatcttaaaattagtgtgtatgaatgttatgtctgtttttttatgacaggaaggaggtgatg |
36763338 |
T |
|
| Q |
213 |
ttgtaattgacagagctaactgcagagccaaaggtggggcacctggattcaaagtagcagtattgggggctgctggtggaattggtcaatccctttcttt |
312 |
Q |
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| T |
36763339 |
ttgtaattgacagagctaactgcagagccaaaggtggggcacctggattcaaagtagcagtattgggggctgctggtggaattggtcaatccctttcttt |
36763438 |
T |
|
| Q |
313 |
gctgttgaagatgaacccattggtttcagttcttcatctttacgatgtcgtcaacacccctggtgtcacagctgatgttagtcacatggacactggtgct |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763439 |
gctgttgaagatgaacccactggtttcagttcttcatctttacgatgttgtcaacacccctggtgtcacagctgatgttagtcacatggacactggtgct |
36763538 |
T |
|
| Q |
413 |
gtggtaa |
419 |
Q |
| |
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||||||| |
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| T |
36763539 |
gtggtaa |
36763545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 458 - 840
Target Start/End: Original strand, 36763584 - 36763966
Alignment:
| Q |
458 |
aacaaaatgttgatatcatctaaaattgtataaaacaaaaaattaaatcatatttggttgtgtgccgcgttgacatttctcatgttcctatgcactttga |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763584 |
aacaaaatgttgatatcatctaaaattgtataaaacaaaaaattaaatcatatttggttgtgtgccgcgttgacatttctcatgttcctatgcactttga |
36763683 |
T |
|
| Q |
558 |
acgtgactttactgaagcaacatatttcagcttcagtaatggcacggtgacaccgtgactttataagtttccgaacacgcgcttagtagtggttgtgcta |
657 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
36763684 |
acgtgactttactgaagcaacaaatttcagcttcagtaatggcacggtgacaccgtgactttataagtttccgaacacgtgcttagtagtggctgtgcta |
36763783 |
T |
|
| Q |
658 |
attcatagtggttagtaatagttgtgtttttctttggttcaacctggattctgttcaggccactatttattttaaggatgtgcaagttgttttaacaata |
757 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
36763784 |
attcatagtggttagtaataattgtgtttttctttggttcaacctgaattctgttcaggccactatttattttaaggatatgcgagttgttttaacaata |
36763883 |
T |
|
| Q |
758 |
tttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggttcgtggctttttggggcaaccacaacttgagaa |
840 |
Q |
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| T |
36763884 |
tttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggttcgtggctttttggggcaaccacaacttgagaa |
36763966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 402
Target Start/End: Complemental strand, 4991652 - 4991489
Alignment:
| Q |
239 |
gccaaaggtggggcacctggattcaaagtagcagtattgggggctgctggtggaattggtcaatccctttctttgctgttgaagatgaacccattggttt |
338 |
Q |
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||||||||||| |||| ||||||||||| || | ||||| ||||| || ||||| || ||| | |||||| || || ||||||| || |||||||||| |
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| T |
4991652 |
gccaaaggtggatcaccaggattcaaagttgcgattttgggtgctgcagggggaataggacaacctctttctatgttgatgaagatcaatccattggttt |
4991553 |
T |
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| Q |
339 |
cagttcttcatctttacgatgtcgtcaacacccctggtgtcacagctgatgttagtcacatgga |
402 |
Q |
| |
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| T |
4991552 |
ctgttcttcatctttatgatgttgttaatactcctggtgttacttctgatatcagtcacatgga |
4991489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 579
Target Start/End: Complemental strand, 35038240 - 35038203
Alignment:
| Q |
542 |
ttcctatgcactttgaacgtgactttactgaagcaaca |
579 |
Q |
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| T |
35038240 |
ttcctatgcactttgaacgtgacttaactgaagcaaca |
35038203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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