View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21312_low_3 (Length: 398)
Name: NF21312_low_3
Description: NF21312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21312_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 157 - 391
Target Start/End: Complemental strand, 11471358 - 11471129
Alignment:
| Q |
157 |
atcaacaattggaatgttatttttcactcaaaatcaaacttcattttgaaggatgttaataatggtgttatagtgcaccgaactatataccatttgacgt |
256 |
Q |
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| T |
11471358 |
atcaacaattggaatgttatttttcac-caaaatcaaacttcgttttgaaggatg---ataatggtgttatagtgcaccgaactatataccatttgactt |
11471263 |
T |
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| Q |
257 |
aaaagagaaaaattatctcttataattataagacgaaattgatgaacaaactaaaacaaatcatgttagctttgatggacaaaactgagaagagataaat |
356 |
Q |
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| T |
11471262 |
aaa-gagaaaaattatctcttataataataagacgaaattgatgaacaaactaaaacaaatcatgttagttttgatggacaaaactgagaagagataaat |
11471164 |
T |
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| Q |
357 |
attcatgtttgtgctaactatgatgatgatgatgt |
391 |
Q |
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| T |
11471163 |
attcatgtttgtgctaactatgatgatgatgatgt |
11471129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11471521 - 11471596
Alignment:
| Q |
1 |
aaatactgaacttgagaaatgaatttgattttgaagaaaaatggatatggaatggttttagagcttttaaaattta |
76 |
Q |
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| T |
11471521 |
aaatactgaacttgagaaatgaatttgattttgaagaaaaatggatatggaatggttttagagcttttaaaattta |
11471596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 11477978 - 11477937
Alignment:
| Q |
170 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
211 |
Q |
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| T |
11477978 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
11477937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 389
Target Start/End: Complemental strand, 11484319 - 11484209
Alignment:
| Q |
279 |
taattataagacgaaattgatgaacaaactaaaacaaatcatgttagctttgatggacaaaactgagaagagataaatattcatgtttgtgctaactatg |
378 |
Q |
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| T |
11484319 |
taataataagacaaaattgatgaagaaatataagcaaatcatgttatctttgataagcaaaactcagaaaagatggatatttatgtttatgccaacaatg |
11484220 |
T |
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| Q |
379 |
atgatgatgat |
389 |
Q |
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| T |
11484219 |
atgatgatgat |
11484209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 11484600 - 11484552
Alignment:
| Q |
163 |
aattggaatgttatttttcactcaaaatcaaacttcattttgaaggatg |
211 |
Q |
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| T |
11484600 |
aattcgaatgtcatttttcacgaaaaatcaaacttcattttgaaggatg |
11484552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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