View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21313_high_1 (Length: 632)

Name: NF21313_high_1
Description: NF21313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21313_high_1
NF21313_high_1
[»] chr8 (1 HSPs)
chr8 (1-632)||(36950375-36951009)


Alignment Details
Target: chr8 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 36950375 - 36951009
Alignment:
Q  1 tatatgatgttaatgttgcttcctttgtgatgttgattacagaaaagtttagggattctcaattgtcatagctcttgtaaaaatcaacatatctgttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36950375 tatatgatgttaatgttgcttcctttgtgatgttgattacagaaaagtttagggattctcaattgtcatagctcttgtaaaaatcaacatatctgttgtt 36950474  T
Q  101 gatcttctaggtgtgttgtgttgtatgtagtttaaattgtttcaaattaccagagaataaagaaacaaattattatttaccactcataaaaagattattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36950475 gatcttctaggtgtgttgtgttgtatgtagtttaaattgtttcaaattaccagagaataaagaaacaaattattatttaccactcataaaaagattattg 36950574  T
Q  201 aaaataatggttggtaaaaacatctaaataagtggatggtccctcctttttctgtctttggaattttgcgggaaaagattccaaaagcattctttagcgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36950575 aaaataatggttggtaaaaacatctaaataagtggatggtccctcctttttctgtctttggaattttgcgggaaaagattccaaaagcattctttagtgt 36950674  T
Q  301 tgaaacctgttaaaggattcattgttgttttttcttccgtgttttcaaactcattatattggctgtatatgtttcagattgggtcacaataaaaagctgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36950675 tgaaacctgttaaaggattcattgttgttttttcttccgtgttttcaaactcattatattggctgtatatgtttcagattgggtcacaataaaaagctgg 36950774  T
Q  401 tggatgagaagatgaannnnnnnnatcttagctgtgagtaacatgtttaacctttcaaaagaaatggctcacttcctgaagttatctaaataaattagtg 500  Q
    | ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36950775 tcgatgagaagatgaattttttttatcttagctgtgagtaacatgtttaacctttcaaaagaaatggctcacttcctgaagttatctaaataaattagtg 36950874  T
Q  501 atattctgctagtcatggaggacaatggaaggtaatgttcatagaaattacta--ctttcctattcattctcctttg-ttttgtattttgttttgaccgt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  36950875 atattctgctagtcatggaggacaatggaaggtaatgttcatagaaattactattctttcctattcattctcctttgtttttgtattttgttttgaccgt 36950974  T
Q  598 gtattctgttctgtatgcatgtagcaatgtattgt 632  Q
    |||||||||||||||||||||||||||||||||||    
T  36950975 gtattctgttctgtatgcatgtagcaatgtattgt 36951009  T

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