View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21313_low_2 (Length: 423)
Name: NF21313_low_2
Description: NF21313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21313_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 23904297 - 23903867
Alignment:
| Q |
1 |
ctcccttcttcttcttcgcgcctgtgattctttctactcttcatcatattgaaattggaaggttctaaacctttcaagagttgagtctgaggaggaagaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||| |
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| T |
23904297 |
ctcccttcttcttcttcgcgcccgtgattctttctactcttcatcatattgaaattggatgattctaaaccagtcaagagttgaggctgaggaggaagaa |
23904198 |
T |
|
| Q |
101 |
acttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgccaacatattggtaatagatgaatcgaaatt |
200 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23904197 |
acttgttggcttcttcaaaacctctattgaattgagaaacagaatctgcattactgaaaatgttctctgccaacatattggtaatagatgaatcgaaatt |
23904098 |
T |
|
| Q |
201 |
tacgagtccatcactaacactacttgaagcacaggaa------------------ttaacaagatcagaaacaggagtatcaggtgaaaagggtttcgac |
282 |
Q |
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|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904097 |
tatgggtccatcactaacactacttgaagcacaggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggtttcgac |
23903998 |
T |
|
| Q |
283 |
tcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggggaaagagcatcatggaatgatttttctgtgattt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23903997 |
tcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggtgaaagagcatcatggaatgatttttctgtgattt |
23903898 |
T |
|
| Q |
383 |
gtaagctaagtggatcataaaaaggtctctg |
413 |
Q |
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| T |
23903897 |
gtaagctaagtggatcataaaaaggtctctg |
23903867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 23922687 - 23923117
Alignment:
| Q |
1 |
ctcccttcttcttcttcgcgcctgtgattctttctactcttcatcatattgaaattggaaggttctaaacctttcaagagttgagtctgaggaggaagaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||| |
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| T |
23922687 |
ctcccttcttcttcttcgcgcccgtgattctttctactcttcatcatattgaaattggatgattctaaaccagtcaagagttgaggctgaggaggaagaa |
23922786 |
T |
|
| Q |
101 |
acttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgccaacatattggtaatagatgaatcgaaatt |
200 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23922787 |
acttgttggcttcttcaaaacctctattgaattgagaaacagaatctgcattactgaaaatgttctctgccaacatattggtaatagatgaatcgaaatt |
23922886 |
T |
|
| Q |
201 |
tacgagtccatcactaacactacttgaagcacagga------------------attaacaagatcagaaacaggagtatcaggtgaaaagggtttcgac |
282 |
Q |
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| T |
23922887 |
tatgggtccatcactaacactacttgaagcacaggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggtttcgac |
23922986 |
T |
|
| Q |
283 |
tcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggggaaagagcatcatggaatgatttttctgtgattt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23922987 |
tcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggtgaaagagcatcatggaatgatttttctgtgattt |
23923086 |
T |
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| Q |
383 |
gtaagctaagtggatcataaaaaggtctctg |
413 |
Q |
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| T |
23923087 |
gtaagctaagtggatcataaaaaggtctctg |
23923117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 23912834 - 23912930
Alignment:
| Q |
76 |
aagagttgagtctgaggaggaagaaacttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgcca |
172 |
Q |
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| T |
23912834 |
aagagttgaggctgcggaggaagaaacttgttggcttcttctaaacttttattgaatagagaaacagaatctgcatcactgaaaatgttttgtgcca |
23912930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 23913183 - 23913246
Alignment:
| Q |
350 |
aaagagcatcatggaatgatttttctgtgatttgtaagctaagtggatcataaaaaggtctctg |
413 |
Q |
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| T |
23913183 |
aaagagcatcatagaatgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctg |
23913246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 23913025 - 23913102
Alignment:
| Q |
237 |
attaacaagatcagaaacaggagtatcaggtgaaaagggtttcgactcgtgagaatcgtcgatgctgctgttactatt |
314 |
Q |
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| T |
23913025 |
attaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgctatt |
23913102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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