View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21313_low_6 (Length: 240)

Name: NF21313_low_6
Description: NF21313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21313_low_6
NF21313_low_6
[»] chr6 (1 HSPs)
chr6 (1-221)||(7225156-7225376)
[»] chr1 (3 HSPs)
chr1 (22-91)||(2919589-2919658)
chr1 (156-194)||(21872857-21872895)
chr1 (134-194)||(6191997-6192057)
[»] chr4 (1 HSPs)
chr4 (94-221)||(25034795-25034925)
[»] chr5 (1 HSPs)
chr5 (125-194)||(33259832-33259901)
[»] chr2 (1 HSPs)
chr2 (156-196)||(7688095-7688135)
[»] scaffold0057 (1 HSPs)
scaffold0057 (156-194)||(78068-78106)
[»] scaffold0003 (1 HSPs)
scaffold0003 (156-194)||(25030-25068)
[»] scaffold0002 (2 HSPs)
scaffold0002 (156-194)||(477007-477045)
scaffold0002 (156-194)||(483527-483565)
[»] chr7 (1 HSPs)
chr7 (156-194)||(16435400-16435438)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7225156 - 7225376
Alignment:
Q  1 tgaaagttgtagtgatagtagtaaattggttgagattcggaaatggaaatttatatatataagattcacaagacaccgtcagaagctgaaaaagcaggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  7225156 tgaaagttgtagtgatagtagtaaattggttgagattcggaaatggaaatttatatatataagattcacaagacaccgttagaagctgaaaaagcaggtg 7225255  T
Q  101 ttaaacttaattgtaaagccatttaaaaaatagaaaattgatttcccaacagcggttttgaaaacagatgtgaaatatacatatttaatttcagggtcta 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7225256 ttaaacttaattgtaaagccatttaaaaaatacaaaattgatttcccaacagcggttttgaaaacagatgtgaaatatacatatttaatttcagggtcta 7225355  T
Q  201 ttttaaaactgatgtaaaaac 221  Q
    |||||||||||||||||||||    
T  7225356 ttttaaaactgatgtaaaaac 7225376  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 2919589 - 2919658
Alignment:
Q  22 taaattggttgagattcggaaatggaaatttatatatataagattcacaagacaccgtcagaagctgaaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2919589 taaattggttgagattcggaaatggaaatttatatatataagattcacaagacaccgttagaagctgaaa 2919658  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 21872895 - 21872857
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  21872895 ttttgaaaactgatgtgaaatatacatatttaacttcag 21872857  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 6191997 - 6192057
Alignment:
Q  134 aaaattgatttcccaacagcggttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||| ||||| | |||| | |||||||||| ||||| |||||||||||||||| |||||    
T  6191997 aaaatttatttcactacagtgattttgaaaactgatgtaaaatatacatatttaacttcag 6192057  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 25034795 - 25034925
Alignment:
Q  94 gcaggttttaaacttaattgtaaagccatttaaaaaatagaaaa---ttgatttcccaacagcggttttgaaaacagatgtgaaatatacatatttaatt 190  Q
    |||||| | ||||||| |||||||||||||||||||| | ||||   |||||||| |||  ||||||||||  || ||||||||||| |||||||||| |    
T  25034795 gcaggtgtcaaacttatttgtaaagccatttaaaaaaaataaaaaaattgatttcacaattgcggttttgaggactgatgtgaaatacacatatttaact 25034894  T
Q  191 tcagggtctattttaaaactgatgtaaaaac 221  Q
    |||| ||| || ||| ||| ||||| |||||    
T  25034895 tcagtgtccatcttataacagatgtgaaaac 25034925  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 33259901 - 33259832
Alignment:
Q  125 aaaaaatagaaaattgatttcccaacagcggttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||| ||||||  |||| | |||| | |||||||||| |||||||||||||||||||||| |||||    
T  33259901 aaaaaataaaaaatttgtttcactacagtgattttgaaaactgatgtgaaatatacatatttaacttcag 33259832  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 7688135 - 7688095
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcaggg 196  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  7688135 ttttgaaaactgatgtgaaatatacatatttaacttcaggg 7688095  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 78106 - 78068
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  78106 ttttgaaaactgatgtgaaatatacatatttaacttcag 78068  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 25030 - 25068
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  25030 ttttgaaaactgatgtgaaatatacatatttaacttcag 25068  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 477045 - 477007
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  477045 ttttgaaaactgatgtgaaatatacatatttaacttcag 477007  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 483565 - 483527
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  483565 ttttgaaaactgatgtgaaatatacatatttaacttcag 483527  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 16435400 - 16435438
Alignment:
Q  156 ttttgaaaacagatgtgaaatatacatatttaatttcag 194  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  16435400 ttttgaaaactgatgtgaaatatacatatttaacttcag 16435438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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