View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21313_low_7 (Length: 237)
Name: NF21313_low_7
Description: NF21313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21313_low_7 |
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| [»] scaffold0414 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 46644139 - 46644343
Alignment:
| Q |
21 |
aaaagcttgtgtttcaaacatgaacaacccttatgtccccatccactaccacatgaatgtgactccaaatcacaagttcacgttagacatatcttgttgg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46644139 |
aaaagcttgtgtttcaaacatgaacaacccttatgtccccatccactaccacatgaatgtgactccaaatcacaagttcgcgttagacatatcttgttgg |
46644238 |
T |
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| Q |
121 |
gaaattaattgaagttaagaaacaaacgtaagtgaaaagaggacgggacaannnnnnnaatgaaaagaggactagacaattagtgtccactatattatgc |
220 |
Q |
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| T |
46644239 |
gaaattaattgaagttaagaaacaaacgtaagtgaaaagaggacgggacaatttttttaatgaaaagaggacggcacaattagtgtccactatattatgc |
46644338 |
T |
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| Q |
221 |
ctatg |
225 |
Q |
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||||| |
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| T |
46644339 |
ctatg |
46644343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0414 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0414
Description:
Target: scaffold0414; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 8097 - 7894
Alignment:
| Q |
21 |
aaaagcttgtgtttcaaacatgaacaacccttatgtccccatccactaccacatgaatgtgactccaaatcacaagttcacgttagacatatcttgttgg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8097 |
aaaagcttgtgtttcaaacatgaacaacccttatgtccccatccactaccacatgaatgtgactccaaatcacaagttctcgttagacatatcttgttgg |
7998 |
T |
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| Q |
121 |
gaaattaattgaagttaagaaacaaacgtaagtgaaaagaggacgggacaannnnnnnaatgaaaagaggactagacaattagtgtccactatattatgc |
220 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7997 |
gaaattaattgaagttaagaaacaaacgcaagtgaaaagaggaagggacaatttttttaatgaaaagaggactagacaattagtg-ccactatattatgc |
7899 |
T |
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| Q |
221 |
ctatg |
225 |
Q |
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|||| |
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| T |
7898 |
ttatg |
7894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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