View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21313_low_8 (Length: 217)
Name: NF21313_low_8
Description: NF21313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21313_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 27024792 - 27024979
Alignment:
| Q |
17 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024792 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
27024891 |
T |
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| Q |
117 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
204 |
Q |
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| T |
27024892 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
27024979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 10118370 - 10118183
Alignment:
| Q |
17 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118370 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
10118271 |
T |
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| Q |
117 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
204 |
Q |
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| T |
10118270 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
10118183 |
T |
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Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 19256545 - 19256732
Alignment:
| Q |
17 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19256545 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagtggggtccaaactgca |
19256644 |
T |
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| Q |
117 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
204 |
Q |
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| T |
19256645 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
19256732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 33020565 - 33020752
Alignment:
| Q |
17 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33020565 |
cagagagagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagaggggtccaaactgca |
33020664 |
T |
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| Q |
117 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33020665 |
cccacaagcagtggagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgat |
33020752 |
T |
|
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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 4890947 - 4890870
Alignment:
| Q |
22 |
agagaaaaattgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacaca |
99 |
Q |
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|||| |||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| || ||||||| |
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| T |
4890947 |
agaggaaaattgttggagatgatagttgaggatttactggaaggggaagttgattatgagtttgatattgtagacaca |
4890870 |
T |
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