View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21314_high_4 (Length: 529)
Name: NF21314_high_4
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21314_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 513
Target Start/End: Original strand, 38229785 - 38230247
Alignment:
| Q |
30 |
tcaaacccttcgattctaaattcaaattcatcaactaatcaaacccnnnnnnnctcaaaggtgcgaataaatactcatggtgagtggcttgtggtaaatc |
129 |
Q |
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| T |
38229785 |
tcaaacccttcgattctaaattcaaattcatcaactaatcaaacccaaaaaaactcaaaggtgcgaataaatactcatggtgagtggcttgtggtaaatc |
38229884 |
T |
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| Q |
130 |
gtaaaaagaagaaaactccaccaattacagtgaagaaaaaatagatgggacaattaattagaaattcaaaaaacttgggtgcattcaagttgcaattaaa |
229 |
Q |
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| T |
38229885 |
gtaaaaagaagaaaactccaccaattacagtgaagaaaaaatagatgggacaattaattagaaactcaaaaaacttgggtgcattcaagttgcaattaaa |
38229984 |
T |
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| Q |
230 |
ggaggaattaagtcaaatgataattatgaagaaggaagggataaggcgcaaatcatgtccgatggaggaagtgagaaaccacaaaaaacgtggtgatgtg |
329 |
Q |
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| T |
38229985 |
ggaggaattaagtcaaatgataattatgaagaaggaagggataaggcgcaaatcatgtccgatggaggaagtgagaaaccacaaaaaacgtggtgatgtg |
38230084 |
T |
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| Q |
330 |
gaaccacaatagcagaattttatggaacaccgcgccggagttctactcagccgcgccggtgttctcaaccttccattattttttgtttgaaattgatttt |
429 |
Q |
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| T |
38230085 |
gaaccacaatagcagaattttatggaacaccgcgccg---------------------gtgttctcaaccttccattattttttgtttgaaattgatttt |
38230163 |
T |
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| Q |
430 |
tctaatctagatctggatgaaaaatagaggaagaaagagaagcgatggaagaggtgacggtggccgtgttttacataaagggtg |
513 |
Q |
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| T |
38230164 |
tctaatctagatctggatgaaaaatagaggaagaaagagaagcgattgaagaggtgacggtggccgtgttttacataaagggtg |
38230247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 483
Target Start/End: Original strand, 10155870 - 10155958
Alignment:
| Q |
395 |
caaccttccattattttttgtttgaaattgatttttctaatctagatctggatgaaaaatagaggaagaaagagaagcgatggaagagg |
483 |
Q |
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|||| |||||||||||||||||||||||||||||| | ||||||||| | |||||||||| | ||||| |||||||||||||||||| |
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| T |
10155870 |
caacattccattattttttgtttgaaattgattttccggatctagatccagctgaaaaatagtgcaagaaggagaagcgatggaagagg |
10155958 |
T |
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