View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21314_high_5 (Length: 482)

Name: NF21314_high_5
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21314_high_5
NF21314_high_5
[»] chr2 (12 HSPs)
chr2 (17-471)||(44623720-44624174)
chr2 (143-440)||(44614563-44614857)
chr2 (17-79)||(44614861-44614921)
chr2 (77-185)||(39370109-39370217)
chr2 (77-164)||(39459274-39459361)
chr2 (77-180)||(39468345-39468448)
chr2 (82-180)||(39152581-39152679)
chr2 (290-396)||(39473637-39473743)
chr2 (77-180)||(39397783-39397886)
chr2 (314-461)||(39458917-39459064)
chr2 (278-363)||(39389332-39389417)
chr2 (331-364)||(39390708-39390741)
[»] chr8 (2 HSPs)
chr8 (331-471)||(40347367-40347507)
chr8 (40-180)||(45342056-45342196)
[»] chr6 (1 HSPs)
chr6 (83-180)||(16113305-16113402)
[»] chr5 (1 HSPs)
chr5 (40-108)||(17059551-17059622)
[»] scaffold0250 (1 HSPs)
scaffold0250 (191-240)||(4326-4375)
[»] chr3 (1 HSPs)
chr3 (271-324)||(51574601-51574654)


Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 44624174 - 44623720
Alignment:
Q  17 aaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624174 aaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtc 44624075  T
Q  117 caccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624074 caccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaac 44623975  T
Q  217 ttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44623974 ttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaac 44623875  T
Q  317 tccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggcctt 416  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623874 tccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggcctt 44623775  T
Q  417 ccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623774 ccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattctt 44623720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 143 - 440
Target Start/End: Complemental strand, 44614857 - 44614563
Alignment:
Q  143 agatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcattttta 242  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||     
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  243 cttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattcctt 342  Q
    |||| |||| |||| |||||| |||||| | |   |||||| |  ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttgtttcaaacatt---ttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattcctt 44614661  T
Q  343 ttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa 440  Q
    ||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||  ||  |||||||| ||||||||||||| ||| ||||    
T  44614660 ttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa 44614563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 44614921 - 44614861
Alignment:
Q  17 aaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatca 79  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||    
T  44614921 aaatatcaacatcaataaaata--gatgaatagcaacatttaccaaattctttttcctcatca 44614861  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 39370217 - 39370109
Alignment:
Q  77 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 176  Q
    |||| |||||||| |||| ||||| ||| |||| |||||||| | || ||||||| |||||||| |||| |||||| ||||  | ||| ||| |||||||    
T  39370217 tcatattgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctctt 39370118  T
Q  177 ttaattcga 185  Q
    |||||||||    
T  39370117 ttaattcga 39370109  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 39459361 - 39459274
Alignment:
Q  77 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa 164  Q
    |||| ||||||| ||||||||||| |||||||   ||||||| |||||||||| ||||||||||   ||||||||| |||| ||||||    
T  39459361 tcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa 39459274  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 39468448 - 39468345
Alignment:
Q  77 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 176  Q
    |||| ||||||| || |||||||| ||||||| | ||||||  |||| ||| ||  |||||||| ||| ||||||| |||| |||||||||| |||||||    
T  39468448 tcatattgtttccctttcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctctt 39468349  T
Q  177 ttaa 180  Q
    ||||    
T  39468348 ttaa 39468345  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 39152679 - 39152581
Alignment:
Q  82 ttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 180  Q
    ||||||||||||||| ||| ||||||| |  |||||| ||   ||||| |||||||||| ||||||||||  || |||||||| ||| |||||||||||    
T  39152679 ttgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  290 ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt 389  Q
    ||||||||||| |||||||| ||||||||| |||||  ||  | ||||| ||||||||||||||| | ||||||  || | |||||||||| | | ||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  390 ctgattc 396  Q
    |||||||    
T  39473737 ctgattc 39473743  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 39397783 - 39397886
Alignment:
Q  77 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 176  Q
    |||| ||||||| ||||||||||| |||||||  |||||||| |||| |||| |||| |||||| ||| ||||||| | |  || ||| ||| |||||||    
T  39397783 tcatattgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctctt 39397882  T
Q  177 ttaa 180  Q
    ||||    
T  39397883 ttaa 39397886  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 461
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
Q  314 aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc 413  Q
    |||||| |||||  || |||||||| ||||||||||||||| | ||||||  | |  |||||||||| | | ||||||||||| || ||| |||   |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  414 cttccaattcaccctttttagattcaaactcatttacttgaccatcaa 461  Q
    |||| |||||| ||| ||| ||||||| ||| ||| || |||||||||    
T  39458964 cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa 39458917  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
Q  278 ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt 363  Q
    ||||||||  ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| ||  |||||||| |||| ||||||    
T  39389332 ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt 39389417  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 364
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
Q  331 ttcaaattccttttcttttgattcaaactccttt 364  Q
    |||||||||||| |||||||||||||||||||||    
T  39390708 ttcaaattccttctcttttgattcaaactccttt 39390741  T

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Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 331 - 471
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
Q  331 ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt 430  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||  || | ||| ||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  431 ttagattcaaactcatttacttgaccatcaagtatattctt 471  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  40347407 ttagattcaaactcatttactcgaccatcaagtatattctt 40347367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 45342196 - 45342056
Alignment:
Q  40 agatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgac 139  Q
    ||||||||| |||  |||||||||||||||||| ||||| | |||||||| |||||||||||||||||||  ||||||| | ||||||||||||||||||    
T  45342196 agatgaataacaaattttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattattcagctttgac 45342097  T
Q  140 ttaagatccttgatttgtacttcaatctgattctcttttaa 180  Q
    | ||| ||||||||||| ||||||| |||||||||||||||    
T  45342096 tcaaggtccttgatttgcacttcaaactgattctcttttaa 45342056  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 16113402 - 16113305
Alignment:
Q  83 tgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 180  Q
    |||||| |||| |||||| |||||||  ||||||| ||||| |  ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  16113402 tgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaa 16113305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 17059622 - 17059551
Alignment:
Q  40 agatgaatagcaacatttaccaaattctttttc---ttcatcatgttgtttctctgtcaactcaagctcctt 108  Q
    ||||||||| ||||||||||||||||| |||||   ||||||||||||||||| ||||||||||| ||||||    
T  17059622 agatgaataacaacatttaccaaattcattttccccttcatcatgttgtttctttgtcaactcaaactcctt 17059551  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
Q  191 ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt 240  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  4375 ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt 4326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
Q  271 aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac 324  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||    
T  51574654 aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac 51574601  T

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