View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21314_low_10 (Length: 345)
Name: NF21314_low_10
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21314_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 52998700 - 52998379
Alignment:
| Q |
14 |
gagatgaacaaagaacaagacgcggttgcattagctacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
113 |
Q |
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| T |
52998700 |
gagaagaacaaagaacaagacgcggttgcattaggtacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
52998601 |
T |
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| Q |
114 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
213 |
Q |
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| T |
52998600 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
52998501 |
T |
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| Q |
214 |
tttatatctgaatatgactatcattctgctatatctcta------tataatatattgtagatagaacgaggaccacattgtatgcagccaatcccttatc |
307 |
Q |
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| T |
52998500 |
tttatatctgaatatgactatcattctgctatatctctatatatatataatatattgcagatagaacgaggaccacattgtatgcagccaatcccttatc |
52998401 |
T |
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| Q |
308 |
tcttataatatgcattctaaat |
329 |
Q |
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|||||||||||||||||||||| |
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| T |
52998400 |
tcttataatatgcattctaaat |
52998379 |
T |
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