View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21314_low_11 (Length: 322)
Name: NF21314_low_11
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21314_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7340906 - 7341245
Alignment:
| Q |
1 |
ctgattattgtacaaaatctaaagtatgaaacaaagtcatagtgaaaatatgtctatagtaaactaaaatctatattactctcaatgcgaaggatctcca |
100 |
Q |
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| T |
7340906 |
ctgattattgtacaaaatctaaagtatgaaacaaagtcatagtgaaaatatgtctatagtaaactaaaatctatattactctcaatgcgaaggatctcca |
7341005 |
T |
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| Q |
101 |
tattactctcatttcataaatagagaaaaccataaatctctattacaagagaatagaagaagtacatgagaaaggaa------------------gagaa |
182 |
Q |
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| T |
7341006 |
tattactctcatttcataaatagagaaaaccataaatctctattacaagagaatagaagaagtacatgagaaaggaagagaaggtttatgaaagggagaa |
7341105 |
T |
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| Q |
183 |
ggtcgatgagttgacaaatattccacacccctttctcttctcaaacttcccttatatattccaatcattggaannnnnnnnnngttatcaattttctcca |
282 |
Q |
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| T |
7341106 |
ggtcgatgagttgacaaatattccacacctctttctcttctcaaacttcccttatatattccaatcattggaaatttttttttgttatcaattttctcca |
7341205 |
T |
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| Q |
283 |
attattggatcaactaacatgtctttttctctaaccattt |
322 |
Q |
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| T |
7341206 |
attattggatcaactaacatgtctttttctctaaccattt |
7341245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 24805406 - 24805371
Alignment:
| Q |
218 |
tcttctcaaacttcccttatatattccaatcattgg |
253 |
Q |
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| T |
24805406 |
tcttctcaaacttccgttatatattccaatcattgg |
24805371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 26765720 - 26765677
Alignment:
| Q |
212 |
cctttctcttctcaaacttcccttatatattccaatcattggaa |
255 |
Q |
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| T |
26765720 |
cctttctcttttcaaactttccttatatattcaaatcattggaa |
26765677 |
T |
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