View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21314_low_13 (Length: 288)

Name: NF21314_low_13
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21314_low_13
NF21314_low_13
[»] chr4 (1 HSPs)
chr4 (6-288)||(55736852-55737134)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 55736852 - 55737134
Alignment:
Q  6 atttccgaccaaggtttataattggttgtgaatgatatgatgtttgaaggtgacatcagtgttttgtggggaaccgttgaatccagcgctattgttattg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55736852 atttccgaccaaggtttataattggttgtgaatgatatgatgtttgaaggtgacatcagtgttttgtggggaaccgttgaatccagcgctattgttattg 55736951  T
Q  106 ggtctatgtggcacgtcattctttgtgagtatgtggatgcacaacgtggcagctgccgtgatgttgatgccggtggccacagggctgctacagcggctgc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55736952 ggtctatgtggcacgtcattctttgtgagtatgtggatgcacaacgtggcagctgccgtgatgttgatgccggtggccacagggctgctacagaggctgc 55737051  T
Q  206 caccaccgtcagagcaatcggagttggtgaataagttcagcagagcggtggttctgacagtggtttatgcggttccaattgga 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55737052 caccaccgtcagagcaatcggagttggtgaataagttcagcagagcggtggttctgacagtggtttatgcggttccaattgga 55737134  T

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