View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21314_low_16 (Length: 248)

Name: NF21314_low_16
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21314_low_16
NF21314_low_16
[»] chr5 (1 HSPs)
chr5 (1-233)||(41626791-41627023)
[»] chr2 (11 HSPs)
chr2 (4-234)||(30384935-30385165)
chr2 (15-233)||(23783298-23783516)
chr2 (1-234)||(30395684-30395917)
chr2 (15-233)||(23768566-23768784)
chr2 (68-233)||(30476524-30476689)
chr2 (14-233)||(8378942-8379161)
chr2 (63-234)||(30484697-30484868)
chr2 (68-221)||(30425284-30425437)
chr2 (68-218)||(30437572-30437722)
chr2 (68-221)||(30469383-30469536)
chr2 (68-221)||(30431317-30431470)
[»] chr8 (4 HSPs)
chr8 (68-221)||(15851600-15851753)
chr8 (68-215)||(15858506-15858653)
chr8 (68-221)||(15865568-15865721)
chr8 (68-221)||(15844365-15844518)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 41627023 - 41626791
Alignment:
Q  1 aacctaacactatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41627023 aacctaacattatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctg 41626924  T
Q  101 aaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41626923 aaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattgggcaaaacttttctct 41626824  T
Q  201 attggaagcaaagatggcaatgacattgatttt 233  Q
    |||||||||||||||||||||||||||||||||    
T  41626823 attggaagcaaagatggcaatgacattgatttt 41626791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 30384935 - 30385165
Alignment:
Q  4 ctaacactatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaa 103  Q
    ||||||||| |||||||||||||| ||||| | |||||| | ||| | |||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  30384935 ctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaa 30385034  T
Q  104 gattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctatt 203  Q
    |||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |    
T  30385035 gattttttggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaat 30385134  T
Q  204 ggaagcaaagatggcaatgacattgattttg 234  Q
    ||||||||| |||||||||||||||||||||    
T  30385135 ggaagcaaaaatggcaatgacattgattttg 30385165  T

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Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 23783516 - 23783298
Alignment:
Q  15 tgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctgga 114  Q
    ||||||| ||||||||| |||||||||| | ||| | ||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||     
T  23783516 tgctggaatggaggtttacatgccaattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggt 23783417  T
Q  115 ggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaaga 214  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||||||  ||||||||| ||||||||||||||||||||||| || |||||||||||||    
T  23783416 ggaatttccaaagcaacaaacggtagattttcatattttccgtttggagcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaaga 23783317  T
Q  215 tggcaatgacattgatttt 233  Q
    |||||||| ||||||||||    
T  23783316 tggcaatggcattgatttt 23783298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30395684 - 30395917
Alignment:
Q  1 aacctaacactatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctg 100  Q
    ||||| ||| || |||||||||||||||||||| | |||||| | ||| | || ||||| ||  || ||||||| |||||||||||||||||||||||||    
T  30395684 aacctgacattacctgctggagtggaggttttcttaccaattcttttgattcatcatgactgcaaactatggggcgatgatgctaaaatgttcaatcctg 30395783  T
Q  101 aaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctct 200  Q
    | |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||    
T  30395784 agagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaaaacttttccct 30395883  T
Q  201 attggaagcaaagatggcaatgacattgattttg 234  Q
    | ||||||||||||||||| || || ||||||||    
T  30395884 aatggaagcaaagatggcattgtcaatgattttg 30395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 23768566 - 23768784
Alignment:
Q  15 tgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctgga 114  Q
    ||||||| |||| |||| | |||| ||| | ||| | ||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||     
T  23768566 tgctggaatggatgtttacttgccgattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggt 23768665  T
Q  115 ggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaaga 214  Q
    ||||||||||||||||| ||||||||| |||||| |||||| ||||||   |||||||| |||||||||||||| | |||||||||||||||||||||||    
T  23768666 ggaatttccaaagcaacaaacggtagattttcatattttccgtttggagcaggtcctagaatctgcattggacagaccttttctctattggaagcaaaga 23768765  T
Q  215 tggcaatgacattgatttt 233  Q
    |||||||| ||||||||||    
T  23768766 tggcaatggcattgatttt 23768784  T

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Target: chr2; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 30476524 - 30476689
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||||| || || ||| |||||||||||||||||||| ||||    
T  30476524 tatggggtgaagatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggaggggg 30476623  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaatgacattgatttt 233  Q
    ||| || || |||||||||||||| |||||  | ||||||||||||||||||||| || |||||||    
T  30476624 tccaagaatttgcattggacaaaatttttccatgttggaagcaaagatggcaatggcaatgatttt 30476689  T

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Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 8379161 - 8378942
Alignment:
Q  14 ctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctgg 113  Q
    ||||||||||||| |||||| | |||||||| ||| | || ||| |   |||| |||||||||||||||| || |||||||||||||| |||||| |||     
T  8379161 ctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctga 8379062  T
Q  114 aggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaag 213  Q
    |||||||||||||||||| || |||||| ||  || ||||||||||||| ||||||||||  | ||||| |||||||||||||| |||||||||||||||    
T  8379061 aggaatttccaaagcaacaaatggtagatttatatattttccatttggagggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaag 8378962  T
Q  214 atggcaatgacattgatttt 233  Q
    |||||| || || |||||||    
T  8378961 atggcagtgtcaatgatttt 8378942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 30484697 - 30484868
Alignment:
Q  63 tgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttgga 162  Q
    |||| |||||||||| ||||||||  ||||||||||||| |||||| | | |||| |||| |||||||| || ||||||  |||||||||||||||||||    
T  30484697 tgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttgga 30484796  T
Q  163 tggggtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaatgacattgattttg 234  Q
     |||||||||| || || |||||||||||||||||  | |||||||||||||||||||| ||||||||||||    
T  30484797 gggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattttg 30484868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 30425284 - 30425437
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||||||||||||  |||||||||| || |||||||| | |||  |||  |||||||| || || |||  ||||||||||||||||||| ||||    
T  30425284 tatggggtgatgatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggaggggg 30425383  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || ||||||||||||||||||||| | ||||||||||||||||||||    
T  30425384 tcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggcaat 30425437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 30437572 - 30437722
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||| ||||||||  ||||||||||||| |||||||||| |||  |||  |||||||| || || |||  ||||||| ||||||||||| ||||    
T  30437572 tatggggtgacgatgctaaggtgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggaggggg 30437671  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggc 218  Q
    |||||| || ||||||||||| ||||||||| | |||||||||||||||||    
T  30437672 tcctagaatttgcattggacagaacttttctatgttggaagcaaagatggc 30437722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 30469383 - 30469536
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||| ||||||||  |||||||||| || |||||||||| |||  |||  |||||||| || || |||  ||||||||||||||||| | ||||    
T  30469383 tatggggtgaagatgctaaggtgttcaatcccgagagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcaggggg 30469482  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || ||||||||||| ||||||||  | ||||||||||||||||||||    
T  30469483 tcctagaatttgcattggacagaacttttccatgttggaagcaaagatggcaat 30469536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 30431317 - 30431470
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||| ||||||||  |||||||||| || |||||||| | |||  |||  |||||||| || || |||  ||||||| ||||||||| | ||||    
T  30431317 tatggggtgaagatgctaaggtgttcaatcccgagagattttcagaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaaggggg 30431416  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || || |||||||||||||||||  | ||||||||||||||||||||    
T  30431417 tcctagaatttgaattggacaaaacttttccatgttggaagcaaagatggcaat 30431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 15851753 - 15851600
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||||||||| || | ||||||||||||| | ||||||| ||||||| | || || || || ||   |||||| | | | || |||||||||||    
T  15851753 tatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatgggg 15851654  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || ||  |||||||||||||| |  |||| ||||||||||| |||||    
T  15851653 tcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 15851600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 15858653 - 15858506
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||||||||| ||   |||||| |||||||| ||| ||| ||||||| | || ||||| || ||   |||||| | ||| || |||||||||||    
T  15858653 tatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatgggg 15858554  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagat 215  Q
    |||||| || ||  |||||||||||||| |  |||| |||||||||||    
T  15858553 tcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 15858506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 15865721 - 15865568
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    |||||||||||||||| ||   |||||| |||||||| ||| ||| ||||||| | || || || || || | |||||| | ||| || |||||||||||    
T  15865721 tatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttggatgggg 15865622  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || ||  |||||||||||||| |  || | ||||||||||| |||||    
T  15865621 tcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaat 15865568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 15844518 - 15844365
Alignment:
Q  68 tatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatgggg 167  Q
    ||||||| |||||||| ||   |||||| || ||||| ||| ||| ||||||| | || ||||| || ||   |||||| | ||| || |||||||||||    
T  15844518 tatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccctttggatgggg 15844419  T
Q  168 tcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 221  Q
    |||||| || ||  |||||||||||||| |  |||| ||||||||||| |||||    
T  15844418 tcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaat 15844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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