View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21314_low_3 (Length: 564)

Name: NF21314_low_3
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21314_low_3
NF21314_low_3
[»] chr4 (18 HSPs)
chr4 (20-518)||(55736997-55737492)
chr4 (517-564)||(40574777-40574824)
chr4 (519-564)||(50052483-50052528)
chr4 (519-564)||(55475191-55475236)
chr4 (518-564)||(6034043-6034089)
chr4 (518-564)||(11511517-11511563)
chr4 (518-564)||(31910191-31910237)
chr4 (518-564)||(50526226-50526272)
chr4 (519-564)||(8343218-8343263)
chr4 (519-564)||(480502-480547)
chr4 (519-564)||(19670771-19670816)
chr4 (519-564)||(24995162-24995207)
chr4 (519-564)||(29239886-29239931)
chr4 (519-564)||(29548014-29548059)
chr4 (519-564)||(41236347-41236392)
chr4 (519-564)||(48183104-48183149)
chr4 (512-557)||(55079776-55079821)
chr4 (519-563)||(29234301-29234345)
[»] chr2 (20 HSPs)
chr2 (102-266)||(9378549-9378713)
chr2 (517-564)||(40613957-40614004)
chr2 (519-564)||(2533124-2533169)
chr2 (519-564)||(9058480-9058525)
chr2 (519-564)||(20700815-20700860)
chr2 (519-564)||(30915463-30915508)
chr2 (519-564)||(33436155-33436200)
chr2 (524-564)||(19930875-19930915)
chr2 (524-564)||(28863460-28863500)
chr2 (517-564)||(27864702-27864749)
chr2 (515-557)||(28381717-28381759)
chr2 (519-561)||(38273200-38273242)
chr2 (518-564)||(40701477-40701523)
chr2 (519-564)||(5574543-5574588)
chr2 (519-564)||(7465790-7465835)
chr2 (519-564)||(17473020-17473065)
chr2 (519-564)||(33436211-33436256)
chr2 (519-564)||(42257193-42257238)
chr2 (519-564)||(45097790-45097835)
chr2 (524-564)||(41575142-41575182)
[»] chr5 (18 HSPs)
chr5 (517-564)||(28177773-28177820)
chr5 (518-561)||(26720515-26720558)
chr5 (518-561)||(26990264-26990307)
chr5 (519-564)||(2740274-2740319)
chr5 (509-564)||(33149693-33149748)
chr5 (519-564)||(2252223-2252268)
chr5 (519-564)||(6679698-6679743)
chr5 (516-561)||(40145404-40145449)
chr5 (524-564)||(18520939-18520979)
chr5 (524-564)||(36875658-36875698)
chr5 (517-564)||(14831812-14831859)
chr5 (518-564)||(35785198-35785244)
chr5 (519-564)||(3921320-3921365)
chr5 (519-564)||(15409665-15409710)
chr5 (517-558)||(21370012-21370053)
chr5 (519-564)||(35943947-35943992)
chr5 (519-564)||(36732997-36733042)
chr5 (523-555)||(10356638-10356670)
[»] chr8 (17 HSPs)
chr8 (518-564)||(15048236-15048282)
chr8 (515-564)||(20074989-20075038)
chr8 (521-564)||(10621142-10621185)
chr8 (509-564)||(34012351-34012406)
chr8 (517-564)||(43414636-43414683)
chr8 (519-561)||(4854921-4854963)
chr8 (519-564)||(30479529-30479574)
chr8 (519-564)||(37038479-37038524)
chr8 (524-564)||(5957835-5957875)
chr8 (517-564)||(504176-504223)
chr8 (517-564)||(15197331-15197378)
chr8 (518-564)||(40423998-40424044)
chr8 (519-564)||(1179995-1180040)
chr8 (519-564)||(12831047-12831092)
chr8 (519-564)||(16383377-16383422)
chr8 (519-564)||(34307216-34307261)
chr8 (516-564)||(23122652-23122700)
[»] chr3 (18 HSPs)
chr3 (515-561)||(26141590-26141636)
chr3 (516-564)||(53982008-53982056)
chr3 (513-564)||(14623894-14623945)
chr3 (514-564)||(11095408-11095458)
chr3 (514-564)||(33118906-33118956)
chr3 (519-564)||(11347977-11348022)
chr3 (519-564)||(49607414-49607459)
chr3 (523-564)||(52629304-52629345)
chr3 (511-561)||(20764973-20765023)
chr3 (518-564)||(33644199-33644245)
chr3 (518-560)||(45058611-45058653)
chr3 (519-557)||(47531865-47531903)
chr3 (519-564)||(8956762-8956807)
chr3 (519-564)||(24700009-24700054)
chr3 (519-564)||(35536626-35536671)
chr3 (519-564)||(41189819-41189864)
chr3 (519-564)||(54868950-54868995)
chr3 (524-564)||(48587146-48587186)
[»] chr6 (8 HSPs)
chr6 (519-564)||(31110814-31110859)
chr6 (519-561)||(31976248-31976290)
chr6 (510-564)||(32869669-32869723)
chr6 (524-564)||(22880713-22880753)
chr6 (517-564)||(31953085-31953132)
chr6 (518-564)||(15508079-15508125)
chr6 (519-564)||(15990097-15990142)
chr6 (519-564)||(30341415-30341460)
[»] chr7 (23 HSPs)
chr7 (517-564)||(21234399-21234446)
chr7 (519-564)||(3434562-3434607)
chr7 (517-561)||(31735882-31735926)
chr7 (517-564)||(19329840-19329887)
chr7 (519-561)||(46374860-46374902)
chr7 (519-564)||(8080438-8080483)
chr7 (519-564)||(40846168-40846213)
chr7 (517-564)||(35137531-35137578)
chr7 (518-557)||(39255985-39256024)
chr7 (519-557)||(18207180-18207218)
chr7 (519-561)||(26296644-26296686)
chr7 (518-564)||(32564481-32564527)
chr7 (519-561)||(46033859-46033901)
chr7 (519-564)||(7389389-7389434)
chr7 (508-564)||(8238201-8238258)
chr7 (519-564)||(11044188-11044233)
chr7 (519-564)||(19436242-19436287)
chr7 (519-564)||(22343361-22343406)
chr7 (520-557)||(35522877-35522914)
chr7 (519-564)||(36361968-36362013)
chr7 (519-564)||(38044197-38044242)
chr7 (519-560)||(38837217-38837258)
chr7 (519-564)||(41915741-41915786)
[»] chr1 (13 HSPs)
chr1 (519-561)||(32813247-32813289)
chr1 (516-564)||(27564790-27564838)
chr1 (518-564)||(9474931-9474977)
chr1 (518-564)||(41608548-41608594)
chr1 (519-564)||(2581915-2581960)
chr1 (519-564)||(51898738-51898783)
chr1 (517-564)||(37649196-37649243)
chr1 (517-564)||(47452375-47452422)
chr1 (518-564)||(48716337-48716383)
chr1 (518-564)||(50591055-50591101)
chr1 (519-564)||(3000319-3000364)
chr1 (519-564)||(49811582-49811627)
chr1 (519-563)||(23597147-23597191)
[»] scaffold1268 (1 HSPs)
scaffold1268 (517-561)||(987-1031)
[»] scaffold1267 (1 HSPs)
scaffold1267 (517-561)||(987-1031)
[»] scaffold0321 (1 HSPs)
scaffold0321 (519-564)||(10164-10209)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Original strand, 55736997 - 55737492
Alignment:
Q  20 gtggcagctgccgtgatgttgatgccggtggccacagggctgctacagcggctgccaccaccgtcagagcaatcggagttggtgaataagttcagcagag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55736997 gtggcagctgccgtgatgttgatgccggtggccacagggctgctacagaggctgccaccaccgtcagagcaatcggagttggtgaataagttcagcagag 55737096  T
Q  120 cggtggttctgacagtggtttatgcggttccaattggaggaatgagcactttgacagggacaggtgtaaatttgatattgattggaatgtggaagagtct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55737097 cggtggttctgacagtggtttatgcggttccaattggaggaatgagcactttgacagggacaggtgtaaatttgatattgattggaatgtggaagagtct 55737196  T
Q  220 tgttcctggtgcaaaaccaataagtttcaacacatggttcttctttgcttttccggtagcgattgtttttcttgtatgcttttggtgtattctctgcttg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55737197 tgttcctggtgcaaaaccaataagtttcaacacatggttcttctttgcttttccggtagcgattgtttttcttgtatgcttttggtgtattctctgcttg 55737296  T
Q  320 atttatctaaggaagggctcagctagcgctctctctccttatttgagtaaaggacacttgaagagggaattggaagctctaggtaagtggccttcttttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55737297 atttatctaaggaagggctcagctagcgctctctctccttatttgagtaaaggacacttgaagagggaattggaagctctaggtaagtggccttcttttt 55737396  T
Q  420 cactgtcttttatggtagaagaagatgtggacatgtggttataattataaagttaagaaattttcatgatcatatcacttttatttgcatttttattat 518  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55737397 cactgtcttttatggtagatg--catgtggacatgtggttataattat-aagttaagaaattttcatgatcatatcacttttatttgcatttttattat 55737492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 40574777 - 40574824
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  40574777 atgagttatgatacatagacatccttaggtggtaatacaccctttgac 40574824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 50052528 - 50052483
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccctttgac 50052483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 55475191 - 55475236
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccctttgac 55475236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 6034043 - 6034089
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  6034043 tgagtaatgatacatagacacccttaggtggcaatacaccctttgac 6034089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 11511563 - 11511517
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  11511563 tgagtaatgatacatagacacccttaggtggcaatacaccctttgac 11511517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 31910191 - 31910237
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||    
T  31910191 tgagttatgatacatagacatccttaggtgacaatacactctttgac 31910237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 50526272 - 50526226
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  50526272 tgagtaatgatacatagacatctttaggtggcaatacaccctttgac 50526226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 8343263 - 8343218
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgac 8343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 480547 - 480502
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||| ||||||||||||||||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccctttgac 480502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 19670816 - 19670771
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccccttgac 19670771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 24995207 - 24995162
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| |||||| ||||||| |||||| |||||||||||||||||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccctttgac 24995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 29239886 - 29239931
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccatttgac 29239931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 29548059 - 29548014
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||||||||||||||||||||| || |||||    
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcccttgac 29548014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 41236347 - 41236392
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgac 41236392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 48183149 - 48183104
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccctttgac 48183104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 557
Target Start/End: Complemental strand, 55079821 - 55079776
Alignment:
Q  512 ttattatgagttatgatacatggacatccttaggtggcaatacacc 557  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||    
T  55079821 ttattaggagttatgatacataaacacccttaggtggcaatacacc 55079776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 29234345 - 29234301
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttga 563  Q
    |||| ||||||||| |||| |||||| ||||||||||||||||||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccctttga 29234301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 9378549 - 9378713
Alignment:
Q  102 tgaataagttcagcagagcggtggttctgacagtggtttatgcggttccaattggaggaatgagcactttgacagggacaggtgtaaatttgatattgat 201  Q
    |||| |||||||| ||||| ||| |||| |||||||| |||||    ||||||||||| || |||||| | ||||| |||||||| || |||||| | ||    
T  9378549 tgaacaagttcagtagagcagtgattctaacagtggtgtatgctacaccaattggagggataagcactctaacaggaacaggtgtgaacttgataataat 9378648  T
Q  202 tggaatgtggaagagtcttgttcctggtgcaaaaccaataagtttcaacacatggttcttctttg 266  Q
    |||||||||||| || ||||  ||||  |||||||||||||| |||||  | ||||| |||||||    
T  9378649 tggaatgtggaaaagccttgcccctgaagcaaaaccaataagcttcaattcttggtttttctttg 9378713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 40614004 - 40613957
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  40614004 atgagttatgatacatagacatccttaggtggcaatacaccctttgac 40613957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 2533124 - 2533169
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||||    
T  2533124 gagttatgatacatagacatccttaagtggcaatacatcctttgac 2533169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 9058480 - 9058525
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 9058525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 20700815 - 20700860
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccctttgac 20700860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 30915463 - 30915508
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 30915508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 33436200 - 33436155
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 33436155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 19930915 - 19930875
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacaccctttgac 19930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Original strand, 28863460 - 28863500
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgac 28863500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 27864702 - 27864749
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  27864702 atgagtaatgatacatagacacccttatgtggcaatacaccctttgac 27864749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 557
Target Start/End: Complemental strand, 28381759 - 28381717
Alignment:
Q  515 ttatgagttatgatacatggacatccttaggtggcaatacacc 557  Q
    |||||||| ||||||||| |||| |||||||||||||||||||    
T  28381759 ttatgagtaatgatacatagacacccttaggtggcaatacacc 28381717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 38273242 - 38273200
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||    
T  38273242 gagttatgatacatagacattcttagatggcaatacacccttt 38273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 40701477 - 40701523
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  40701477 tgagtaatgatacatagacacccttaggtggcaatacaccttttgac 40701523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 5574588 - 5574543
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| ||||  |||||||||||||||||||||||||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccctttgac 5574543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 7465835 - 7465790
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| |||||| |||||||||||||||||||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccctttgac 7465790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 17473020 - 17473065
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| |||||| |||||||||||||||||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgac 17473065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 33436211 - 33436256
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  33436211 gagtaatgatacatagacatccttagatggcaatacaccttttgac 33436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 42257193 - 42257238
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||| ||||||||||||||| | ||||||    
T  42257193 gagttatgatacatagacatctttaggtggcaatacatcatttgac 42257238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 45097835 - 45097790
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||||||||||||||||||||| || |||||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcccttgac 45097790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 564
Target Start/End: Original strand, 41575142 - 41575182
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  41575142 atgatacatagacatccttagatggtaatacaccctttgac 41575182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 28177773 - 28177820
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28177773 atgagttatgatacatagacatccttaggtggcaatacaccctttgac 28177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 26720515 - 26720558
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  26720515 tgagttatgatacatagacatccttaggtggcaatacacccttt 26720558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 26990264 - 26990307
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  26990264 tgagttatgatacatagacatccttaggtggcaatacacccttt 26990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 2740274 - 2740319
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccctttgac 2740319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 564
Target Start/End: Complemental strand, 33149748 - 33149693
Alignment:
Q  509 tttttattatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| |||||||| ||||||||| |||| |||||||||| |||||||||||||||    
T  33149748 ttttttttatgagtaatgatacatagacacccttaggtggtaatacaccctttgac 33149693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 2252268 - 2252223
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccccttgac 2252223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 6679698 - 6679743
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaatacaccttttgac 6679743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 516 - 561
Target Start/End: Original strand, 40145404 - 40145449
Alignment:
Q  516 tatgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||    
T  40145404 tatgagtaatgatacatagacacccttaggtggcaatacacccttt 40145449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 18520979 - 18520939
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgac 18520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 36875698 - 36875658
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  36875698 atgatacatagacacccttaggtggcaatacaccctttgac 36875658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 14831812 - 14831859
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| ||||  |||||||||||||||||||||||||    
T  14831812 atgagtaatgatacatagacactcttaggtggcaatacaccctttgac 14831859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 35785198 - 35785244
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  35785198 tgagtaatgatacatagacacccttaggtggcaatacaccttttgac 35785244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 3921365 - 3921320
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  3921365 gagttatgatacataaacacccttaggtggcaatacaccccttgac 3921320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 15409710 - 15409665
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||||||||||| |||||||  |||||||    
T  15409710 gagttatgatacatagacatccttaggtgacaatacattctttgac 15409665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 21370012 - 21370053
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccc 558  Q
    |||| ||||||||||| ||||||||||||||| |||||||||    
T  21370012 atgaattatgatacatagacatccttaggtggtaatacaccc 21370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 35943992 - 35943947
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||| ||||||||||||||||| | ||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgac 35943947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 36733042 - 36732997
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccctttgac 36732997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 555
Target Start/End: Original strand, 10356638 - 10356670
Alignment:
Q  523 tatgatacatggacatccttaggtggcaataca 555  Q
    |||||||||| ||||||||||||||||||||||    
T  10356638 tatgatacatagacatccttaggtggcaataca 10356670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 15048282 - 15048236
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  15048282 tgagttatgatacatagacatccttaggtggcaatacaccctttgac 15048236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 20075038 - 20074989
Alignment:
Q  515 ttatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  20075038 ttatgagtaatgatacatagacatccttaggtggcaatacactctttgac 20074989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 564
Target Start/End: Complemental strand, 10621185 - 10621142
Alignment:
Q  521 gttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||| ||||||||||||||| |||||||||||||||    
T  10621185 gttatgatacatagacatccttaggtggtaatacaccctttgac 10621142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 564
Target Start/End: Complemental strand, 34012406 - 34012351
Alignment:
Q  509 tttttattatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| |||||||| ||||||||| |||| |||||||||| |||||||||||||||    
T  34012406 ttttttttatgagtaatgatacatagacacccttaggtggtaatacaccctttgac 34012351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 43414683 - 43414636
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  43414683 atgagttatgatacatagacatccttagatggcaacacaccctttgac 43414636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 4854963 - 4854921
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacacccttt 4854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 30479574 - 30479529
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgac 30479529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 37038479 - 37038524
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccctttgac 37038524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Original strand, 5957835 - 5957875
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  5957835 atgatacatagacattcttaggtggcaatacaccctttgac 5957875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 504223 - 504176
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  504223 atgagtaatgatacatagacacccttaggtggcaatacaccttttgac 504176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 15197331 - 15197378
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| ||||  |||||||||||||||||||||||||    
T  15197331 atgagtaatgatacatagacactcttaggtggcaatacaccctttgac 15197378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 40424044 - 40423998
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| || | ||||||||||||||||||||||||||    
T  40424044 tgagtaatgatacatagatacccttaggtggcaatacaccctttgac 40423998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 1180040 - 1179995
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| |||||||||| |||||||||||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgac 1179995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 12831047 - 12831092
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||| ||||||||||||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgac 12831092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 16383377 - 16383422
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccccttgac 16383422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 34307216 - 34307261
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccccttgac 34307261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 23122700 - 23122652
Alignment:
Q  516 tatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||| ||||||||| |||| ||||| ||||||||||||| ||||||    
T  23122700 tatgagtaatgatacatagacacccttaagtggcaatacaccttttgac 23122652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 26141636 - 26141590
Alignment:
Q  515 ttatgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26141636 ttatgagttatgatacatagacatccttaggtggcaatacacccttt 26141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 53982008 - 53982056
Alignment:
Q  516 tatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  53982008 tatgagtaatgatacatagacacccttaggtggcaatacaccctttgac 53982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 14623945 - 14623894
Alignment:
Q  513 tattatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  14623945 tattaggagtaatgatacatagacatccttaggtggcaatacaccccttgac 14623894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 11095458 - 11095408
Alignment:
Q  514 attatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  11095458 attaagagtaatgatacatagacacccttaggtggcaatacaccctttgac 11095408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 33118956 - 33118906
Alignment:
Q  514 attatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| |||||||||||||| |||| ||||||||| ||||||||||||||||    
T  33118956 attaagagttatgatacatagacacccttaggtgacaatacaccctttgac 33118906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 11348022 - 11347977
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||    
T  11348022 gagttatgatacatagacatccttaggtgacaatacatcctttgac 11347977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 49607414 - 49607459
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 49607459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 523 - 564
Target Start/End: Original strand, 52629304 - 52629345
Alignment:
Q  523 tatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgac 52629345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 20765023 - 20764973
Alignment:
Q  511 tttattatgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||| |||||||||| |||| ||||||||||||||| ||||||| ||||    
T  20765023 tttattttgagttatgagacatagacatccttaggtggtaatacactcttt 20764973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 33644199 - 33644245
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| |||| |||||||||||||||||||||    
T  33644199 tgagtaatgatacatagacacccttgggtggcaatacaccctttgac 33644245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 45058653 - 45058611
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctt 560  Q
    |||||||||||||||  ||| ||||||||||||||||||||||    
T  45058653 tgagttatgatacataaacacccttaggtggcaatacaccctt 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 47531865 - 47531903
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacc 557  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacacc 47531903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 8956762 - 8956807
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||||||    
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcctttgac 8956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 24700054 - 24700009
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  24700054 gagtaatgatacatagacatccttagttggcaatacaccttttgac 24700009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 35536626 - 35536671
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccatttgac 35536671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 41189864 - 41189819
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||||    
T  41189864 gagttatgatacatatacatccttaggtggcaatacatcatttgac 41189819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 54868995 - 54868950
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaatacaccttttgac 54868950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 48587186 - 48587146
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| || | ||||||||||||||||||||||||||    
T  48587186 atgatacatagatacccttaggtggcaatacaccctttgac 48587146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 31110859 - 31110814
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  31110859 gagttatgatacatagacatccttaggtggcaatacaccctttgac 31110814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 31976248 - 31976290
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatatacccttt 31976290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 32869669 - 32869723
Alignment:
Q  510 ttttattatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| |||||||| | ||||||| |||| ||||||||||||||||||||||||||    
T  32869669 tttttttatgagtaaagatacatagacacccttaggtggcaatacaccctttgac 32869723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 22880753 - 22880713
Alignment:
Q  524 atgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgac 22880713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 31953132 - 31953085
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| |||||| || ||||||||||||||||||||||||| |||||    
T  31953132 atgagtaatgatagatagacatccttaggtggcaatacaccccttgac 31953085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 15508125 - 15508079
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||  ||| |||||||||||||||||||| |||||    
T  15508125 tgagttatgatacataaacacccttaggtggcaatacaccccttgac 15508079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 15990142 - 15990097
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccccttgac 15990097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 30341460 - 30341415
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  30341460 gagttatgatacataaacacccttaggtggcaatacaccccttgac 30341415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 21234399 - 21234446
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  21234399 atgagttatgatacatagacatccttaggtgacaatacaccctttgac 21234446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 3434562 - 3434607
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccctttgac 3434607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 31735882 - 31735926
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  31735882 atgagttatgatacatagacatccttaggtggcaatacactcttt 31735926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 19329840 - 19329887
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  19329840 atgagtaatgatacatagacatccttaggtggcaatacaccttttgac 19329887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 46374902 - 46374860
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacacccttt 46374860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 8080483 - 8080438
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 8080438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 40846213 - 40846168
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgac 40846168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 35137531 - 35137578
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| |||||| || |||| ||||||||||||||||||||||||||    
T  35137531 atgagtaatgataaatagacacccttaggtggcaatacaccctttgac 35137578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 557
Target Start/End: Complemental strand, 39256024 - 39255985
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacacc 557  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  39256024 tgagttatgatacatagacaaccttaggtggcaatacacc 39255985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 18207180 - 18207218
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacc 557  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  18207180 gagttatgatacatagacaaccttaggtggcaatacacc 18207218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 26296644 - 26296686
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| |||||||||||||| ||||| |||||||    
T  26296644 gagttatgatacatagacatccttaggtgacaatatacccttt 26296686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 32564527 - 32564481
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||  |||| ||||||||||||||||||| |||||    
T  32564527 tgagttatgatacataaacattcttaggtggcaatacaccccttgac 32564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 46033901 - 46033859
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| || || ||||||||||||||||||||||    
T  46033901 gagttatgatacatagatattcttaggtggcaatacacccttt 46033859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 7389389 - 7389434
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| |||||||||||||||||| |||||||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactctttgac 7389434  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 8238201 - 8238258
Alignment:
Q  508 atttttattatgagttatgatacatggacatcct-taggtggcaatacaccctttgac 564  Q
    |||||||  ||||||||||||||||  ||| ||| |||||||||||||||||||||||    
T  8238201 atttttaaaatgagttatgatacataaacaccctgtaggtggcaatacaccctttgac 8238258  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 11044188 - 11044233
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  11044188 gagtaatgatacatagacacccttaggtggcaatacatcctttgac 11044233  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 19436287 - 19436242
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||||||||||| ||||||||| ||||||    
T  19436287 gagtaatgatacatagacatccttaggtgacaatacaccttttgac 19436242  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 22343361 - 22343406
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccccttgac 22343406  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 35522877 - 35522914
Alignment:
Q  520 agttatgatacatggacatccttaggtggcaatacacc 557  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  35522877 agttatgatacatagacatccttaagtggcaatacacc 35522914  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 36362013 - 36361968
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcctttgac 36361968  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 38044197 - 38044242
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccccttgac 38044242  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 560
Target Start/End: Original strand, 38837217 - 38837258
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctt 560  Q
    |||| ||||||||| |||| ||||||||||||||||||||||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacaccctt 38837258  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 41915741 - 41915786
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||||||  ||| |||||||||||||||||||| |||||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccccttgac 41915786  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 32813247 - 32813289
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacacccttt 32813289  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 27564838 - 27564790
Alignment:
Q  516 tatgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  27564838 tatgagtaatgatacatagacatccttaggtggcaatacaccttttgac 27564790  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 9474977 - 9474931
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  9474977 tgagtaatgatacatagacacccttaggtggcaatacaccctttgac 9474931  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 41608594 - 41608548
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||    
T  41608594 tgagttatgatacataaacatccttaggtggcaatacaccccttgac 41608548  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 2581915 - 2581960
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccctttgac 2581960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 51898783 - 51898738
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccctttgac 51898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 37649196 - 37649243
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  37649196 atgagtaatgatacatagacatctttaggtggcaatacactctttgac 37649243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 47452422 - 47452375
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||||||    
T  47452422 atgagtaatgatacatagacacccttaggtggtaatacaccctttgac 47452375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 48716383 - 48716337
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  48716383 tgagtaatgatacatagacacccttaggtggcaatacaccatttgac 48716337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 50591101 - 50591055
Alignment:
Q  518 tgagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||||  ||| |||||||||||||||||||| |||||    
T  50591101 tgagttatgatacataaacacccttaggtggcaatacaccccttgac 50591055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Original strand, 3000319 - 3000364
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||| |||||||||  ||| ||||||||||||||||||||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgac 3000364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 49811627 - 49811582
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    ||||||||||| || |||||||||||||| ||||||||| ||||||    
T  49811627 gagttatgatagatagacatccttaggtgacaatacaccatttgac 49811582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 23597191 - 23597147
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttga 563  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactctttga 23597147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 561
Target Start/End: Complemental strand, 1031 - 987
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 561
Target Start/End: Complemental strand, 1031 - 987
Alignment:
Q  517 atgagttatgatacatggacatccttaggtggcaatacacccttt 561  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||    
T  1031 atgagtaatgatacatagacatctttaggtggcaatacacccttt 987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 10209 - 10164
Alignment:
Q  519 gagttatgatacatggacatccttaggtggcaatacaccctttgac 564  Q
    |||||||||||||| |||| | ||||||||||||||| ||||||||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcctttgac 10164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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