View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21314_low_8 (Length: 395)

Name: NF21314_low_8
Description: NF21314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21314_low_8
NF21314_low_8
[»] chr4 (4 HSPs)
chr4 (92-244)||(35902676-35902828)
chr4 (53-244)||(23892461-23892653)
chr4 (338-378)||(9203967-9204007)
chr4 (338-378)||(9208186-9208226)
[»] scaffold0135 (7 HSPs)
scaffold0135 (338-378)||(2050-2090)
scaffold0135 (338-378)||(6265-6305)
scaffold0135 (338-378)||(10480-10520)
scaffold0135 (338-378)||(14695-14735)
scaffold0135 (338-378)||(18910-18950)
scaffold0135 (338-378)||(23125-23165)
scaffold0135 (338-378)||(27340-27380)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 35902828 - 35902676
Alignment:
Q  92 tcctcaccaatcatgatctttaaatttgtcatagaagcaaaagaacaatttaaaaaatataaaggatcattaagacgaaactgaatataaaatgagacta 191  Q
    ||||||| | |||||||| |||||||||||||| |||  |||||||||||| ||||| |||||||||||||| ||| ||| |||||| ||||||||||||    
T  35902828 tcctcacaactcatgatccttaaatttgtcataaaagtgaaagaacaatttgaaaaaaataaaggatcattaggactaaa-tgaataaaaaatgagacta 35902730  T
Q  192 ta-tatgaccaaactgaaactaaaaattagataaagaatctaattaaaactaaa 244  Q
    || |||||||||||||||  ||||| | |||||||||| |||| ||||||||||    
T  35902729 tattatgaccaaactgaatttaaaagtaagataaagaacctaactaaaactaaa 35902676  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 23892653 - 23892461
Alignment:
Q  53 cctcacatgttaagcaatgttttccttctgtaatttcagtcctcaccaatcatgatctttaaatttgtcatagaagcaaaagaacaatttaaaaaatata 152  Q
    |||| |||||| | |||||||| |||| || ||||  | ||||| | | |||||||| ||||||||||||||||||| |||||||||||| ||||| |||    
T  23892653 cctctcatgttcaacaatgtttaccttttgaaattgtaatcctcgcaactcatgatccttaaatttgtcatagaagcgaaagaacaatttgaaaaaaata 23892554  T
Q  153 aaggatcattaagacgaaactgaatataaaatgagactata-tatgaccaaactgaaactaaaaattagataaagaatctaattaaaactaaa 244  Q
    |||| |||||| ||| ||| ||||||||||||||||| ||| ||||| ||||||| |  ||||||| ||||||| || | || ||||||||||    
T  23892553 aagggtcattaggactaaattgaatataaaatgagacaatattatgagcaaactggatttaaaaataagataaataaccaaactaaaactaaa 23892461  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 9204007 - 9203967
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9204007 catcaaacacaatgctaaacaactttgtgagttgtaggttg 9203967  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 9208226 - 9208186
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9208226 catcaaacacaatgctaaacaactttgtgagttgtaggttg 9208186  T

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Target: scaffold0135 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 2090 - 2050
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2090 catcaaacacaatgctaaacaactttgtgagttgtaggttg 2050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 6305 - 6265
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6305 catcaaacacaatgctaaacaactttgtgagttgtaggttg 6265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 10520 - 10480
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10520 catcaaacacaatgctaaacaactttgtgagttgtaggttg 10480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 14735 - 14695
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14735 catcaaacacaatgctaaacaactttgtgagttgtaggttg 14695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 18950 - 18910
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18950 catcaaacacaatgctaaacaactttgtgagttgtaggttg 18910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 23165 - 23125
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23165 catcaaacacaatgctaaacaactttgtgagttgtaggttg 23125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 27380 - 27340
Alignment:
Q  338 catcaaacacaatgctaaacaactttgtgagttgtaggttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27380 catcaaacacaatgctaaacaactttgtgagttgtaggttg 27340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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