View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_high_12 (Length: 334)
Name: NF21315_high_12
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 143 - 327
Target Start/End: Complemental strand, 2561077 - 2560893
Alignment:
| Q |
143 |
gaataagagtgaaacgtatggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
242 |
Q |
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| T |
2561077 |
gaataagagtgaaacgtgtggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
2560978 |
T |
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| Q |
243 |
accatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatc |
327 |
Q |
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| T |
2560977 |
accatgattgattaacttgaaattgagacacgttttgtatttactagggaattgacggactatggaattacatttaagaataatc |
2560893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 2561240 - 2561130
Alignment:
| Q |
20 |
ctagctaataacactcatttttagaaatgcacaccctgacaagaagcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaac |
119 |
Q |
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| T |
2561240 |
ctagctaataacactcatttttagaaatgcacaccctgacaagaagcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaac |
2561141 |
T |
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| Q |
120 |
acaagatccta |
130 |
Q |
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| T |
2561140 |
acaagatccta |
2561130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 2559536 - 2559440
Alignment:
| Q |
231 |
tcaatatctataaccatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatc |
327 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
2559536 |
tcaatatccataaccatgattgattaacttgaaattgagacacgttttgtatttaccagggaattgacggactatggaattacatctaagaataatc |
2559440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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