View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_high_16 (Length: 308)
Name: NF21315_high_16
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 72 - 304
Target Start/End: Complemental strand, 30552879 - 30552646
Alignment:
| Q |
72 |
aatcaatatttacattcattaagtcttaagagtataggtgtaaatttcactttgttttgtttgtatgtccattaacttaattgataacaaatcgactaat |
171 |
Q |
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| T |
30552879 |
aatcaatatttacattcattaagtcttaagagtataggtgtaaatttcactttattttgtttgtatgtccattaacttaattgataacaaatcgactaat |
30552780 |
T |
|
| Q |
172 |
ctgcaaaaccatacttctattaatgttcggttagcttttaaatatgtctaactctaagaaaccatcaaagttcaactcgcataaactttttgtaactaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30552779 |
ctgcaaaaccatacttctattaatgttcggttagcttttaaatctgtctaactctaagaaaccatcaaagttcaacttgcataaactttttgtaactaaa |
30552680 |
T |
|
| Q |
272 |
agaatgata-aaaatgtgtgctgcaatctatgaa |
304 |
Q |
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||||||||| ||||||||||||||| |||||||| |
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| T |
30552679 |
agaatgataaaaaatgtgtgctgcactctatgaa |
30552646 |
T |
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