View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21315_high_19 (Length: 254)

Name: NF21315_high_19
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21315_high_19
NF21315_high_19
[»] chr5 (12 HSPs)
chr5 (1-247)||(8547454-8547700)
chr5 (111-231)||(9074125-9074245)
chr5 (116-227)||(1599691-1599802)
chr5 (113-231)||(8529538-8529656)
chr5 (121-231)||(8536110-8536220)
chr5 (155-225)||(2844444-2844514)
chr5 (155-225)||(2856277-2856347)
chr5 (155-225)||(2873887-2873957)
chr5 (155-225)||(2904393-2904463)
chr5 (20-67)||(8536024-8536071)
chr5 (128-222)||(11353898-11353992)
chr5 (128-222)||(11373401-11373495)
[»] scaffold0627 (1 HSPs)
scaffold0627 (12-246)||(5187-5418)
[»] chr6 (1 HSPs)
chr6 (12-243)||(16716885-16717113)
[»] chr7 (4 HSPs)
chr7 (115-231)||(48361239-48361355)
chr7 (111-227)||(35780427-35780544)
chr7 (20-67)||(35780336-35780383)
chr7 (20-67)||(48361388-48361435)
[»] chr4 (1 HSPs)
chr4 (113-231)||(9443699-9443817)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 8547700 - 8547454
Alignment:
Q  1 agcatatttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  8547700 agcatatttcttccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaatataagctgtgtcattt 8547601  T
Q  101 ggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547600 ggcatacgaatcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaa 8547501  T
Q  201 gcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8547500 gcaagccactgcaagaattcacaatatcaaaatgatcacgatctctg 8547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 9074245 - 9074125
Alignment:
Q  111 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccact 210  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| |    
T  9074245 tcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccatt 9074146  T
Q  211 gcaagaattcacaatatcaaa 231  Q
    |||||||||||||||||||||    
T  9074145 gcaagaattcacaatatcaaa 9074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  116 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 215  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  216 aattcacaatat 227  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  113 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 212  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  213 aagaattcacaatatcaaa 231  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  121 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 220  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  221 acaatatcaaa 231  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  155 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 225  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  155 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 225  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  155 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 225  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  155 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 225  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 8536024 - 8536071
Alignment:
Q  20 tttatcactttatattcattagttttaggatagaaaccacaaccagct 67  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  8536024 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  128 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 222  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  128 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 222  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

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Target: scaffold0627 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 5187 - 5418
Alignment:
Q  12 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 111  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||   |||||   ||  |||  | | ||||||| |||||||||||     
T  5187 tccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagct---tcttgtcctattacacgaaccgtgtcatgtggcatacgaac 5283  T
Q  112 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 211  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  212 caagaattcacaatatcaaaatgatcacgatctct 246  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 16716885 - 16717113
Alignment:
Q  12 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||   |||||   ||  |||| | |  ||||||| ||||||||||     
T  16716885 tccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagct---tcttgtcctattacatgaaccctgtcattcggcatacgaac 16716981  T
Q  112 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 211  Q
     ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  212 caagaattcacaatatcaaaatgatcacgatc 243  Q
    || ||||||||||||| ||| | |||||||||    
T  16717082 catgaattcacaatattaaacttatcacgatc 16717113  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  115 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 214  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  215 gaattcacaatatcaaa 231  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 35780427 - 35780544
Alignment:
Q  111 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccac 209  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| |||     
T  35780427 tcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccat 35780526  T
Q  210 tgcaagaattcacaatat 227  Q
    |||||||||| |||||||    
T  35780527 tgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 35780336 - 35780383
Alignment:
Q  20 tttatcactttatattcattagttttaggatagaaaccacaaccagct 67  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  35780336 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 48361435 - 48361388
Alignment:
Q  20 tttatcactttatattcattagttttaggatagaaaccacaaccagct 67  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48361435 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 48361388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  113 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 212  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  213 aagaattcacaatatcaaa 231  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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