View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_high_22 (Length: 215)
Name: NF21315_high_22
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 26579332 - 26579414
Alignment:
| Q |
20 |
gtttgtttaattaaataataacaataaggttgatatgtttggtaaggtaagtaattggttctattattgagaaatgatggcta |
102 |
Q |
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| T |
26579332 |
gtttgtttaattaaataataacaataaggttgatatgtttggtaaggtaagtaattggttctattattgagaaatgatggcta |
26579414 |
T |
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 26579454 - 26579518
Alignment:
| Q |
142 |
atgaaaagtagaacttgtctggttctgtgcatcaaaacaaacagattcaactattcatctcactc |
206 |
Q |
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| T |
26579454 |
atgaaaagtagaacttgtctggttctgtgcatcaaaacaaacagattcaactattcatctcactc |
26579518 |
T |
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