View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21315_high_6 (Length: 465)
Name: NF21315_high_6
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 7033649 - 7034110
Alignment:
| Q |
9 |
gaaatgaagttgaaaaatgaaaaattaattatctagcacatgaagtacagacacaaacacgaacacaagatgcatacaccaacatcgatattagtttaga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
7033649 |
gaaatgaagttgaaaaatgaaaaattaattatctagcgcatgaagtacggacacaaacacgaacataagatacatacaccgacatcgatattagttaaga |
7033748 |
T |
|
| Q |
109 |
aaaataatataatttaacgtaaacacgtgtattagtgtcaatactgacgcttattggacatctgacacatctttgataataagtatagatgctccgacat |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
7033749 |
aaaataatataatttaacgtaaatacgtgtattagtgtcaatactgacgcttgttggacatctgacacgtttttgataataaatatagatgctccgacat |
7033848 |
T |
|
| Q |
209 |
aaaagtgacttttaaaacaaagtgtgaatgtgttggccaaattatgagaccaatatagtgaagtggcaaaatcacagatgtggtgttgtttccaaaattt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7033849 |
aaaagtgacttttaaaacaaagtgtgaatgtgttgggcaaattatgagaccaatatagtgaagtggcaaaatcacagatgtggttttgtttccaaaattt |
7033948 |
T |
|
| Q |
309 |
gaatcatagtttgaa---tgttacattgcattgcactgcc---------------------ttagttaaacgtgtgggagaaaggagatagagacagtgt |
384 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033949 |
gaatcatagtttgaatgttgttacattgcattgcactgcctatgtccacaagtggtgtcaattagttaaacgtgtgggagaaaggagatagagacagtgt |
7034048 |
T |
|
| Q |
385 |
gtaataatatgaagacacacattggtattgggtttgggaaggtgttagtataatccctattc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7034049 |
gtaataatatgaagacacacattggtattgggtttgggaaggtgttagtataatccctattc |
7034110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University